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|
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2020 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2026 Daniel Patrick Fahey <dpf@helmcontrol.ltd>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages opencog)
#:use-module (gnu packages)
#:use-module (gnu packages admin)
#:use-module (gnu packages boost)
#:use-module (gnu packages check)
#:use-module (gnu packages databases)
#:use-module (gnu packages guile)
#:use-module (gnu packages language)
#:use-module (gnu packages linux)
#:use-module (gnu packages multiprecision)
#:use-module (gnu packages networking)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages serialization)
#:use-module (gnu packages tls)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix gexp)
#:use-module (guix git-download)
#:use-module (guix build-system cmake)
#:use-module (guix utils))
(define-public cogutil
;; The last release was in 2016. Other OpenCog packages require a later
;; version.
(let ((commit "64dca9083dcfa485dcb70fd6fe7ba1f80e0f4082")
(revision "2"))
(package
(name "cogutil")
(version (git-version "2.0.3" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/opencog/cogutil")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"01rr39sq9wakw1wnfzg7m4zl7g8qh3d35ww6q39irx19d6nq66h9"))))
(build-system cmake-build-system)
(arguments
(list
;; Skip ldconfig, which requires root and is unnecessary in Guix.
#:configure-flags
#~(list "-DSKIP_LDCONF=ON")
#:modules '((guix build cmake-build-system)
((guix build gnu-build-system) #:prefix gnu:)
(guix build utils))
#:phases
#~(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys #:rest args)
(when tests?
(apply (assoc-ref gnu:%standard-phases 'check)
#:tests? tests? #:test-target "tests" args)
(for-each
(lambda (file)
(invoke file))
(find-files "tests" "UTest$"))))))))
(inputs
(list boost))
(native-inputs
`(("cxxtest" ,cxxtest)
("python" ,python-minimal)
("pkg-config" ,pkg-config)))
(home-page "https://github.com/opencog/cogutil/")
(synopsis "Low-level C++ programming utilities used by OpenCog components")
(description "The OpenCog utilities is a miscellaneous collection of C++
utilities use for typical programming tasks in multiple OpenCog projects.")
;; Either of these licenses.
(license (list license:agpl3 license:asl2.0)))))
(define-public atomspace
;; The last release was in 2016.
(let ((commit "c8d633bf272b838c2132c21b7c8ddf169a18dd22")
(revision "2"))
(package
(name "atomspace")
(version (git-version "5.0.3" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/opencog/atomspace")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"0fdqmskjh9d7363ldwmh3zhwal847shm15nhb2nan4g4aqdmckrz"))))
(build-system cmake-build-system)
(arguments
(list
#:configure-flags
#~(list "-DSKIP_LDCONF=ON"
(string-append "-DGUILE_INCLUDE_DIR=" #$guile-3.0.11
"/include/guile/3.0/")
(string-append "-DGUILE_SITE_DIR=" #$output
"/share/guile/site/3.0/")
(string-append "-DGUILE_CCACHE_DIR=" #$output
"/lib/guile/3.0/site-ccache")
(string-append "-DPYTHON_INSTALL_PREFIX=" #$output
"/lib/python3.11/site-packages"))
#:modules '((guix build cmake-build-system)
((guix build gnu-build-system) #:prefix gnu:)
(guix build utils))
#:phases
#~(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys #:rest args)
(when tests?
(apply (assoc-ref gnu:%standard-phases 'check)
#:tests? tests? #:test-target "tests" args)
;; Failing tests.
(for-each delete-file
'("tests/scm/MultiAtomSpaceUTest"))
(setenv "GUILE_LOAD_PATH" ".:opencog/scm")
(for-each invoke
(find-files "tests" "UTest$"))))))))
(inputs
(list boost cogutil gmp guile-3.0-latest postgresql))
(native-inputs
`(("cxxtest" ,cxxtest)
("python-cython" ,python-cython)
("python" ,python-minimal)
("pkg-config" ,pkg-config)))
(home-page "https://github.com/opencog/atomspace/")
(synopsis "OpenCog hypergraph database, query system and rule engine")
(description "The OpenCog AtomSpace is an in-RAM @dfn{knowledge
representation} (KR) database, an associated query engine and graph-re-writing
system, and a rule-driven inferencing engine that can apply and manipulate
sequences of rules to perform reasoning. It is a layer that sits on top of
ordinary distributed (graph) databases, providing a large variety of advanced
features not otherwise available.")
(license license:agpl3))))
(define-public atomspace-storage
;; Storage backends for AtomSpace.
(let ((commit "ecd88d673258e51f65cc0605400003affdf4d694")
(revision "0"))
(package
(name "atomspace-storage")
(version (git-version "0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/opencog/atomspace-storage")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"12ssnc313cm5n8bc6zw53dkjm9crrry90lpsknzxafnm61mzcgx3"))))
(build-system cmake-build-system)
(arguments
(list
#:configure-flags
#~(list "-DSKIP_LDCONF=ON"
(string-append "-DGUILE_INCLUDE_DIR=" #$guile-3.0.11
"/include/guile/3.0/")
(string-append "-DGUILE_SITE_DIR=" #$output
"/share/guile/site/3.0/")
(string-append "-DGUILE_CCACHE_DIR=" #$output
"/lib/guile/3.0/site-ccache"))
#:modules '((guix build cmake-build-system)
((guix build gnu-build-system) #:prefix gnu:)
(guix build utils))
#:phases
#~(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys #:rest args)
(when tests?
(apply (assoc-ref gnu:%standard-phases 'check)
#:tests? tests? #:test-target "tests" args)
(for-each invoke
(find-files "tests" "UTest$"))))))))
(inputs
(list atomspace boost cogutil gmp guile-3.0-latest))
(native-inputs
(list cxxtest pkg-config python-minimal))
(home-page "https://github.com/opencog/atomspace-storage")
(synopsis "Storage backends for AtomSpace")
(description "AtomSpace-Storage provides various storage backends
for the AtomSpace hypergraph database.")
(license license:agpl3))))
(define-public cogserver
;; There are no releases.
(let ((commit "3c4da0bd786262bd69a8306f9da88b13f0add1f2")
(revision "3"))
(package
(name "cogserver")
(version (git-version "0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/opencog/cogserver")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"0hfz9z44wpzrabs9fgxhv02jzn0i40di2ncbiizn03g7gccawds5"))))
(build-system cmake-build-system)
(arguments
(list
#:tests? #f ;tests start network server and hang
#:configure-flags
#~(list "-DSKIP_LDCONF=ON"
(string-append "-DGUILE_INCLUDE_DIR=" #$guile-3.0.11
"/include/guile/3.0/")
(string-append "-DGUILE_SITE_DIR=" #$output
"/share/guile/site/3.0/")
(string-append "-DGUILE_CCACHE_DIR=" #$output
"/lib/guile/3.0/site-ccache")
(string-append "-DPYTHON_INSTALL_PREFIX=" #$output
"/lib/python3.11/site-packages"))
#:modules '((guix build cmake-build-system)
((guix build gnu-build-system) #:prefix gnu:)
(guix build utils))
#:phases
#~(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys #:rest args)
(when tests?
(apply (assoc-ref gnu:%standard-phases 'check)
#:tests? tests? #:test-target "tests" args)
;; Failing test.
(delete-file "tests/shell/ShellUTest")
(for-each invoke
(find-files "tests" "UTest$"))))))))
(inputs
(list asio atomspace atomspace-storage boost cogutil
gmp guile-3.0-latest jsoncpp openssl))
(native-inputs
`(("cxxtest" ,cxxtest)
("netcat" ,netcat-openbsd)
("python" ,python)
("python-cython" ,python-cython)
("pkg-config" ,pkg-config)))
(home-page "https://github.com/opencog/cogserver/")
(synopsis "OpenCog network server")
(description "The OpenCog Cogserver is a network and job server for the
OpenCog framework.")
(license license:agpl3))))
(define-public agi-bio
;; There are no releases.
(let ((commit "2f723ad79afc38df9dce73d340ee24c38efb2199")
(revision "2"))
(package
(name "agi-bio")
(version (git-version "0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/opencog/agi-bio")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"1gqmwjbqdjr0qz4wpsxh0k8wam59fvd3pnjxhfswdpvapcl9syk0"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f ; there are none
#:configure-flags
(list
(string-append "-DGUILE_INCLUDE_DIR="
(assoc-ref %build-inputs "guile")
"/include/guile/3.0/")
(string-append "-DGUILE_SITE_DIR="
(assoc-ref %outputs "out")
"/share/guile/site/3.0/"))
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'fix-unqualified-load
(lambda* (#:key outputs #:allow-other-keys)
(substitute* "bioscience/bioscience.scm"
(("\\(load \"bioscience/types/bioscience_types.scm\"\\)")
(format #f "(load \"~a/bioscience/types/bioscience_types.scm\")"
(string-append (assoc-ref outputs "out")
"/share/guile/site/3.0/opencog")))))))))
(inputs
(list atomspace cogutil gmp guile-3.0-latest))
(native-inputs
`(("cxxtest" ,cxxtest)
("python" ,python-minimal)
("pkg-config" ,pkg-config)))
(home-page "https://github.com/opencog/agi-bio")
(synopsis "Genomic and proteomic data exploration and pattern mining")
(description "This is a package for genomic and proteomic research using
the OpenCog toolset with Guile. This includes experiments in applying pattern
mining and other OpenCog components.")
(license license:agpl3))))
|
