From 1285119bdedfd94c58e8938e465f626d998c4633 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Wed, 7 Oct 2015 13:01:36 +0200
Subject: gnu: Add python-joblib.

* gnu/packages/python.scm (python-joblib, python2-joblib): New
  variables.
---
 gnu/packages/python.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

(limited to 'gnu/packages/python.scm')

diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 2c9772e933..5dda0b3429 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -2208,6 +2208,33 @@ written in pure Python.")
 (define-public python2-jinja2
   (package-with-python2 python-jinja2))
 
+(define-public python-joblib
+  (package
+    (name "python-joblib")
+    (version "0.9.0b4")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://pypi.python.org/packages/source/"
+                                  "j/joblib/joblib-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1dvw3f8jgj6h0fxkghbgyclvdzc7l0ig7n0vis70awb5kczb9bs3"))))
+    (build-system python-build-system)
+    (native-inputs
+     `(("python-setuptools" ,python-setuptools)
+       ("python-nose"       ,python-nose)))
+    (home-page "http://pythonhosted.org/joblib/")
+    (synopsis "Using Python functions as pipeline jobs")
+    (description
+     "Joblib is a set of tools to provide lightweight pipelining in Python.
+In particular, joblib offers: transparent disk-caching of the output values
+and lazy re-evaluation (memoize pattern), easy simple parallel computing
+logging and tracing of the execution.")
+    (license bsd-3)))
+
+(define-public python2-joblib
+  (package-with-python2 python-joblib))
+
 (define-public python-docutils
   (package
     (name "python-docutils")
-- 
cgit v1.3


From 3c4010b1e966ca112470eba262de2835815ba218 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Thu, 8 Oct 2015 13:30:23 +0200
Subject: gnu: python-h5py, python2-h5py: Correct inputs.

* gnu/packages/python.scm (python-h5py)
  [inputs]: Remove python-cython and python-numpy.
  [propagated-inputs]: New field.
  [native-inputs]: Drop python-setuptools and add python-cython.
  (python2-h5py): Replace "inputs" with "propagated-inputs".
---
 gnu/packages/python.scm | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

(limited to 'gnu/packages/python.scm')

diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 5dda0b3429..4faa08fe25 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -596,12 +596,12 @@ and verifies that it matches the intended target hostname.")
        (base32
         "0q4f9l8grf6pwp64xbv8bmyxx416s7h4522nnxac056ap3savbps"))))
     (build-system python-build-system)
+    (propagated-inputs
+     `(("python-numpy" ,python-numpy)))
     (inputs
-     `(("python-cython" ,python-cython)
-       ("python-numpy" ,python-numpy)
-       ("hdf5" ,hdf5)))
+     `(("hdf5" ,hdf5)))
     (native-inputs
-     `(("python-setuptools" ,python-setuptools)))
+     `(("python-cython" ,python-cython)))
     (arguments `(#:tests? #f)) ; no test target
     (home-page "http://www.h5py.org/")
     (synopsis "Read and write HDF5 files from Python")
@@ -616,11 +616,11 @@ concepts.")
 (define-public python2-h5py
   (let ((h5py (package-with-python2 python-h5py)))
     (package (inherit h5py)
-      (inputs
+      (propagated-inputs
        `(("python2-numpy" ,python2-numpy)
          ,@(alist-delete
             "python-numpy"
-            (package-inputs h5py)))))))
+            (package-propagated-inputs h5py)))))))
 
 (define-public python-lockfile
   (package
-- 
cgit v1.3


From 797e1401feda5c32c67c2069afdbdc29792dfa78 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Thu, 8 Oct 2015 13:34:11 +0200
Subject: gnu: python-h5py: Fix path to hdf5 library.

* gnu/packages/python.scm (python-h5py)[arguments]: Add "fix-hdf5-paths"
  phase.
---
 gnu/packages/python.scm | 17 ++++++++++++++++-
 1 file changed, 16 insertions(+), 1 deletion(-)

(limited to 'gnu/packages/python.scm')

diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 4faa08fe25..e94a2ebba2 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -596,13 +596,28 @@ and verifies that it matches the intended target hostname.")
        (base32
         "0q4f9l8grf6pwp64xbv8bmyxx416s7h4522nnxac056ap3savbps"))))
     (build-system python-build-system)
+    (arguments
+     `(#:tests? #f ; no test target
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'fix-hdf5-paths
+          (lambda* (#:key inputs #:allow-other-keys)
+            (let ((prefix (assoc-ref inputs "hdf5")))
+              (substitute* "setup_build.py"
+                (("\\['/opt/local/lib', '/usr/local/lib'\\]")
+                 (string-append "['" prefix "/lib" "']"))
+                (("'/opt/local/include', '/usr/local/include'")
+                 (string-append "'" prefix "/include" "'")))
+              (substitute* "setup_configure.py"
+                (("\\['/usr/local/lib', '/opt/local/lib'\\]")
+                 (string-append "['" prefix "/lib" "']")))
+              #t))))))
     (propagated-inputs
      `(("python-numpy" ,python-numpy)))
     (inputs
      `(("hdf5" ,hdf5)))
     (native-inputs
      `(("python-cython" ,python-cython)))
-    (arguments `(#:tests? #f)) ; no test target
     (home-page "http://www.h5py.org/")
     (synopsis "Read and write HDF5 files from Python")
     (description
-- 
cgit v1.3