From ef5cbf9bae96555fc0c1983f30bd466476027b20 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 18 Mar 2015 14:08:20 +0100 Subject: gnu: Add python-h5py and python2-h5py. * gnu/packages/python.scm (python-h5py, python2-h5py): New variables. --- gnu/packages/python.scm | 39 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 2fcdbcc211..7282233bfa 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -324,6 +324,45 @@ etc. ") (define-public python2-babel (package-with-python2 python-babel)) +(define-public python-h5py + (package + (name "python-h5py") + (version "2.4.0") + (source + (origin + (method url-fetch) + (uri (string-append "https://pypi.python.org/packages/source/h/h5py/h5py-" + version ".tar.gz")) + (sha256 + (base32 + "0q4f9l8grf6pwp64xbv8bmyxx416s7h4522nnxac056ap3savbps")))) + (build-system python-build-system) + (inputs + `(("python-cython" ,python-cython) + ("python-numpy" ,python-numpy) + ("hdf5" ,hdf5))) + (native-inputs + `(("python-setuptools" ,python-setuptools))) + (arguments `(#:tests? #f)) ; no test target + (home-page "http://www.h5py.org/") + (synopsis "Read and write HDF5 files from Python") + (description + "The h5py package provides both a high- and low-level interface to the +HDF5 library from Python. The low-level interface is intended to be a +complete wrapping of the HDF5 API, while the high-level component supports +access to HDF5 files, datasets and groups using established Python and NumPy +concepts.") + (license bsd-3))) + +(define-public python2-h5py + (let ((h5py (package-with-python2 python-h5py))) + (package (inherit h5py) + (inputs + `(("python2-numpy" ,python2-numpy) + ,@(alist-delete + "python-numpy" + (package-inputs h5py))))))) + (define-public python-lockfile (package (name "python-lockfile") -- cgit v1.3 From 1f4344574567337a7e32b97f8cb98104deb71666 Mon Sep 17 00:00:00 2001 From: Mark H Weaver Date: Sun, 22 Mar 2015 22:39:56 -0400 Subject: gnu: python: Do not use patchelf. * gnu/packages/python.scm (python-2): Add rpath for lib directory of output to LDFLAGS. Remove 'patchelf' from inputs. Remove #:modules and #:imported-modules from arguments. Remove 'add-lib-to-runpath' phase. (python): Do not add #:modules to inherited package arguments. --- gnu/packages/python.scm | 67 ++++++++++++++++--------------------------------- 1 file changed, 22 insertions(+), 45 deletions(-) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 7282233bfa..23afec7950 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -33,7 +33,6 @@ #:use-module (gnu packages) #:use-module (gnu packages compression) #:use-module (gnu packages databases) - #:use-module (gnu packages elf) #:use-module (gnu packages fontutils) #:use-module (gnu packages gdbm) #:use-module (gnu packages gcc) @@ -134,7 +133,8 @@ (sqlite (assoc-ref %build-inputs "sqlite")) (openssl (assoc-ref %build-inputs "openssl")) (readline (assoc-ref %build-inputs "readline")) - (zlib (assoc-ref %build-inputs "zlib"))) + (zlib (assoc-ref %build-inputs "zlib")) + (out (assoc-ref %outputs "out"))) (list "--enable-shared" ; allow embedding "--with-system-ffi" ; build ctypes (string-append "CPPFLAGS=" @@ -151,43 +151,27 @@ "-L" sqlite "/lib " "-L" openssl "/lib " "-L" readline "/lib " - "-L" zlib "/lib"))) - - #:modules ((guix build gnu-build-system) - (guix build utils) - (guix build rpath) - (srfi srfi-26)) - #:imported-modules ((guix build gnu-build-system) - (guix build utils) - (guix build rpath)) + "-L" zlib "/lib " + "-Wl,-rpath=" out "/lib"))) #:phases - (alist-cons-after - 'strip 'add-lib-to-runpath - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (lib (string-append out "/lib"))) - ;; Add LIB to the RUNPATH of all the executables. - (with-directory-excursion out - (for-each (cut augment-rpath <> lib) - (find-files "bin" ".*"))))) + (alist-cons-before + 'configure 'patch-lib-shells + (lambda _ + ;; Filter for existing files, since some may not exist in all + ;; versions of python that are built with this recipe. + (substitute* (filter file-exists? + '("Lib/subprocess.py" + "Lib/popen2.py" + "Lib/distutils/tests/test_spawn.py" + "Lib/test/test_subprocess.py")) + (("/bin/sh") (which "sh")))) (alist-cons-before - 'configure 'patch-lib-shells + 'check 'pre-check (lambda _ - ;; Filter for existing files, since some may not exist in all - ;; versions of python that are built with this recipe. - (substitute* (filter file-exists? - '("Lib/subprocess.py" - "Lib/popen2.py" - "Lib/distutils/tests/test_spawn.py" - "Lib/test/test_subprocess.py")) - (("/bin/sh") (which "sh")))) - (alist-cons-before - 'check 'pre-check - (lambda _ - ;; 'Lib/test/test_site.py' needs a valid $HOME - (setenv "HOME" (getcwd))) - %standard-phases))))) + ;; 'Lib/test/test_site.py' needs a valid $HOME + (setenv "HOME" (getcwd))) + %standard-phases)))) (inputs `(("bzip2" ,bzip2) ("gdbm" ,gdbm) @@ -195,8 +179,7 @@ ("sqlite" ,sqlite) ; for sqlite extension ("openssl" ,openssl) ("readline" ,readline) - ("zlib" ,zlib) - ("patchelf" ,patchelf))) ; for (guix build rpath) + ("zlib" ,zlib))) (native-inputs `(("pkg-config" ,pkg-config))) (native-search-paths @@ -230,14 +213,8 @@ data types.") (sha256 (base32 "1rdncc7g8g6f3lfdg33rli1yffbiq8z283xy4f5ksl1l8i49psdb")))) - (arguments - (let ((args `(#:modules ((guix build gnu-build-system) - (guix build utils) - (srfi srfi-1) - (srfi srfi-26)) - ,@(package-arguments python-2)))) - (substitute-keyword-arguments args - ((#:tests? _) #t)))) + (arguments (substitute-keyword-arguments (package-arguments python-2) + ((#:tests? _) #t))) (native-search-paths (list (search-path-specification (variable "PYTHONPATH") -- cgit v1.3 From 3cff95cbee7525a99347e3a3e9f2a9cebe55086e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 31 Mar 2015 12:34:37 +0200 Subject: gnu: Add python-decorator. * gnu/packages/python.scm (python-decorator, python2-decorator): New variables. --- gnu/packages/python.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 23afec7950..f7eb478c3c 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -2837,6 +2837,34 @@ PNG, PostScript, PDF, and SVG file output.") (define-public python2-cairocffi (package-with-python2 python-cairocffi)) +(define-public python-decorator + (package + (name "python-decorator") + (version "3.4.2") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/d/decorator/decorator-" + version ".tar.gz")) + (sha256 + (base32 "0i2bnlkh0p9gs76hb28mafandcrig2fmv56w9ai6mshxwqn0083k")))) + (build-system python-build-system) + (arguments '(#:tests? #f)) ; no test target + (native-inputs + `(("python-setuptools" ,python-setuptools))) + (home-page "http://pypi.python.org/pypi/decorator/") + (synopsis "Python module to simplify usage of decorators") + (description + "The aim of the decorator module is to simplify the usage of decorators +for the average programmer, and to popularize decorators usage giving examples +of useful decorators, such as memoize, tracing, redirecting_stdout, locked, +etc. The core of this module is a decorator factory.") + (license license:expat))) + +(define-public python2-decorator + (package-with-python2 python-decorator)) + (define-public python-ipython (package (name "python-ipython") -- cgit v1.3 From 32f77c0445b811481e011674ba6cfdfb22ead3c1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 31 Mar 2015 12:35:09 +0200 Subject: gnu: Add python-networkx. * gnu/packages/python.scm (python-networkx, python2-networkx): New variables. --- gnu/packages/python.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index f7eb478c3c..c5cae6de45 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -3335,6 +3335,35 @@ interfaces in an easy and portable manner.") (define-public python2-netifaces (package-with-python2 python-netifaces)) +(define-public python-networkx + (package + (name "python-networkx") + (version "1.9.1") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/n/networkx/networkx-" + version ".tar.gz")) + (sha256 + (base32 "0n8wy0yq1kmdq4wh68mlhwhkndvwzx48lg41a1z0sxxms0wfp033")))) + (build-system python-build-system) + ;; python-decorator is needed at runtime + (propagated-inputs + `(("python-decorator" ,python-decorator))) + (native-inputs + `(("python-setuptools" ,python-setuptools) + ("python-nose" ,python-nose))) + (home-page "http://networkx.github.io/") + (synopsis "Python module for creating and manipulating graphs and networks") + (description + "NetworkX is a Python package for the creation, manipulation, and study +of the structure, dynamics, and functions of complex networks.") + (license bsd-3))) + +(define-public python2-networkx + (package-with-python2 python-networkx)) + (define-public snakemake (package (name "snakemake") -- cgit v1.3 From ae64112828824895957038842fb705e846e3b69c Mon Sep 17 00:00:00 2001 From: David Thompson Date: Sat, 4 Apr 2015 13:15:40 -0400 Subject: gnu: python-requests: Fix Python 2 version and add support for Python 3. * gnu/packages/python.scm (python-requests): New variable. (python2-requests): Generate based on Python 3 variant. --- gnu/packages/python.scm | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index c5cae6de45..8c86d5a768 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -1571,9 +1571,9 @@ is used by the Requests library to verify HTTPS requests.") (define-public python2-certifi (package-with-python2 python-certifi)) -(define-public python2-requests +(define-public python-requests (package - (name "python2-requests") + (name "python-requests") (version "2.4.0") (source (origin (method url-fetch) @@ -1588,8 +1588,7 @@ is used by the Requests library to verify HTTPS requests.") (inputs `(("python-setuptools" ,python-setuptools) ("python-certifi" ,python-certifi))) - (arguments `(#:tests? #f ; no tests - #:python ,python-2)) + (arguments `(#:tests? #f)) ; no tests (home-page "http://python-requests.org/") (synopsis "Python HTTP library") (description @@ -1597,6 +1596,9 @@ is used by the Requests library to verify HTTPS requests.") than Python’s urllib2 library.") (license asl2.0))) +(define-public python2-requests + (package-with-python2 python-requests)) + (define-public python-jsonschema (package (name "python-jsonschema") -- cgit v1.3 From 0234ca06ceccb6d5ad7c13b98e7998b371bc6c08 Mon Sep 17 00:00:00 2001 From: David Thompson Date: Sat, 4 Apr 2015 13:17:35 -0400 Subject: gnu: Add python-singledispatch. * gnu/packages/python.scm (python-singledispatch, python2-singledispatch): New variables. --- gnu/packages/python.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 8c86d5a768..ddd308bce8 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -3448,3 +3448,32 @@ Python style, together with a fast and comfortable execution environment.") library for Python programs. It is useful to implement low-level X clients. It is written entirely in Python.") (license gpl2+))) + +(define-public python-singledispatch + (package + (name "python-singledispatch") + (version "3.4.0.3") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/s/singledispatch/" + "singledispatch-" version ".tar.gz")) + (sha256 + (base32 + "171b7ip0hsq5qm83np40h3phlr36ym18w0lay0a8v08kvy3sy1jv")))) + (build-system python-build-system) + (native-inputs + `(("python-setuptools" ,python-setuptools))) + (propagated-inputs + `(("python-six" ,python-six))) + (home-page + "http://docs.python.org/3/library/functools.html#functools.singledispatch") + (synopsis "Backport of singledispatch feature from Python 3.4") + (description + "This library brings functools.singledispatch from Python 3.4 to Python +2.6-3.3.") + (license license:expat))) + +(define-public python2-singledispatch + (package-with-python2 python-singledispatch)) -- cgit v1.3 From 2c0499ad876aa9245cd3a4001ee2772a0d2aa03a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 1 Apr 2015 11:59:01 +0200 Subject: gnu: Add python-drmaa. * gnu/packages/python.scm (python-drmaa, python2-drmaa): New variables. --- gnu/packages/python.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index ddd308bce8..59c460af3b 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -2867,6 +2867,37 @@ etc. The core of this module is a decorator factory.") (define-public python2-decorator (package-with-python2 python-decorator)) +(define-public python-drmaa + (package + (name "python-drmaa") + (version "0.7.6") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/d/drmaa/drmaa-" + version ".tar.gz")) + (sha256 + (base32 "0bzl9f9g34dlhwf09i3fdv7dqqzf2iq0w7d6c2bafx1nlap8qfbh")))) + (build-system python-build-system) + ;; The test suite requires libdrmaa which is provided by the cluster + ;; environment. At runtime the environment variable DRMAA_LIBRARY_PATH + ;; should be set to the path of the libdrmaa library. + (arguments '(#:tests? #f)) + (native-inputs + `(("python-nose" ,python-nose) + ("python-setuptools" ,python-setuptools))) + (home-page "https://pypi.python.org/pypi/drmaa") + (synopsis "Python bindings for the DRMAA library") + (description + "A Python package for Distributed Resource Management (DRM) job +submission and control. This package is an implementation of the DRMAA 1.0 +Python language binding specification.") + (license bsd-3))) + +(define-public python2-drmaa + (package-with-python2 python-drmaa)) + (define-public python-ipython (package (name "python-ipython") -- cgit v1.3 From 08c045091e8d8da3b4c677540ed577e8f2448b0d Mon Sep 17 00:00:00 2001 From: Cyril Roelandt Date: Fri, 10 Apr 2015 00:19:20 +0200 Subject: python: Update to 3.4.3 * gnu/packages/python.scm (python): Update from 3.3.5 to 3.4.3. * gnu/packages/patches/python-fix-tests.patch: Update the required test fixes. * gnu/packages/patches/python-libffi-mips-n32-fix.patch: Remove it... * gnu-system.am (dist_patch_DATA): ... and do not reference it here. --- gnu-system.am | 1 - gnu/packages/patches/python-fix-tests.patch | 53 +++++++++++++++++++++- .../patches/python-libffi-mips-n32-fix.patch | 21 --------- gnu/packages/python.scm | 8 ++-- 4 files changed, 54 insertions(+), 29 deletions(-) delete mode 100644 gnu/packages/patches/python-libffi-mips-n32-fix.patch (limited to 'gnu/packages/python.scm') diff --git a/gnu-system.am b/gnu-system.am index 969a9116f0..3c0315e306 100644 --- a/gnu-system.am +++ b/gnu-system.am @@ -510,7 +510,6 @@ dist_patch_DATA = \ gnu/packages/patches/pybugz-stty.patch \ gnu/packages/patches/pyqt-configure.patch \ gnu/packages/patches/python-fix-tests.patch \ - gnu/packages/patches/python-libffi-mips-n32-fix.patch \ gnu/packages/patches/python-sqlite-3.8.4-test-fix.patch \ gnu/packages/patches/python2-rdflib-drop-sparqlwrapper.patch \ gnu/packages/patches/python2-sqlite-3.8.4-test-fix.patch \ diff --git a/gnu/packages/patches/python-fix-tests.patch b/gnu/packages/patches/python-fix-tests.patch index 70e4aa05d5..82c19980f9 100644 --- a/gnu/packages/patches/python-fix-tests.patch +++ b/gnu/packages/patches/python-fix-tests.patch @@ -64,8 +64,8 @@ http://bugs.python.org/issue20868 . @unittest.skipUnless(support.is_resource_enabled('network'), 'network is not enabled') def test_idna(self): ---- Lib/test/test_multiprocessing.py 2014-04-06 23:12:27.575235000 +0200 -+++ Lib/test/test_multiprocessing.py 2014-04-06 23:13:04.827235000 +0200 +--- Lib/test/_test_multiprocessing.py 2014-04-06 23:12:27.575235000 +0200 ++++ Lib/test/_test_multiprocessing.py 2014-04-06 23:13:04.827235000 +0200 @@ -1016,6 +1016,7 @@ if pid is not None: os.kill(pid, signal.SIGINT) @@ -112,3 +112,52 @@ http://bugs.python.org/issue20868 . def test_issue_8959_a(self): from ctypes.util import find_library libc_path = find_library("c") +--- Tools/scripts/run_tests.py.orig 2015-04-06 03:52:17.484000000 +0200 ++++ Tools/scripts/run_tests.py 2015-04-06 03:52:25.880000000 +0200 +@@ -47,7 +47,7 @@ + if threading and not any(is_multiprocess_flag(arg) for arg in regrtest_args): + args.extend(['-j', '0']) # Use all CPU cores + if not any(is_resource_use_flag(arg) for arg in regrtest_args): +- args.extend(['-u', 'all,-largefile,-audio,-gui']) ++ args.extend(['-u', 'all,-largefile,-audio,-gui,-network']) + args.extend(regrtest_args) + print(' '.join(args)) + os.execv(sys.executable, args) +--- Lib/distutils/tests/test_archive_util.py.orig 2015-04-06 04:08:49.288000000 +0200 ++++ Lib/distutils/tests/test_archive_util.py 2015-04-06 04:09:34.396000000 +0200 +@@ -282,6 +282,7 @@ + finally: + del ARCHIVE_FORMATS['xxx'] + ++ @unittest.skipIf(True, "getgrgid(0)[0] raises a KeyError on Guix") + def test_make_archive_owner_group(self): + # testing make_archive with owner and group, with various combinations + # this works even if there's not gid/uid support +@@ -310,6 +311,7 @@ + + @unittest.skipUnless(ZLIB_SUPPORT, "Requires zlib") + @unittest.skipUnless(UID_GID_SUPPORT, "Requires grp and pwd support") ++ @unittest.skipIf(True, "getgrgid(0)[0] raises a KeyError on Guix") + def test_tarfile_root_owner(self): + tmpdir, tmpdir2, base_name = self._create_files() + old_dir = os.getcwd() +--- Lib/distutils/tests/test_sdist.py.orig 2015-04-06 04:10:05.264000000 +0200 ++++ Lib/distutils/tests/test_sdist.py 2015-04-06 04:10:21.448000000 +0200 +@@ -435,6 +435,7 @@ + "The tar command is not found") + @unittest.skipIf(find_executable('gzip') is None, + "The gzip command is not found") ++ @unittest.skipIf(True, "getgrgid(0)[0] raises a KeyError on Guix") + def test_make_distribution_owner_group(self): + # now building a sdist + dist, cmd = self.get_cmd() +--- Lib/test/test_resource.py.orig 2015-04-06 21:30:24.708000000 +0200 ++++ Lib/test/test_resource.py 2015-04-06 23:07:27.220000000 +0200 +@@ -146,6 +146,7 @@ + + @unittest.skipUnless(hasattr(resource, 'prlimit'), 'no prlimit') + @support.requires_linux_version(2, 6, 36) ++ @unittest.skipIf(True, "Bug: the PermissionError is not raised") + def test_prlimit(self): + self.assertRaises(TypeError, resource.prlimit) + if os.geteuid() != 0: diff --git a/gnu/packages/patches/python-libffi-mips-n32-fix.patch b/gnu/packages/patches/python-libffi-mips-n32-fix.patch deleted file mode 100644 index 393883779d..0000000000 --- a/gnu/packages/patches/python-libffi-mips-n32-fix.patch +++ /dev/null @@ -1,21 +0,0 @@ -Fix handling of uint32_t arguments on the MIPS N32 ABI. - -Patch by Mark H Weaver . - ---- Modules/_ctypes/libffi/src/mips/ffi.c.orig 2013-03-16 07:19:39.000000000 -0400 -+++ Modules/_ctypes/libffi/src/mips/ffi.c 2013-10-22 01:11:03.111985247 -0400 -@@ -170,7 +170,14 @@ - break; - - case FFI_TYPE_UINT32: -+#ifdef FFI_MIPS_N32 -+ /* The N32 ABI requires that 32-bit integers -+ be sign-extended to 64-bits, regardless of -+ whether they are signed or unsigned. */ -+ *(ffi_arg *)argp = *(SINT32 *)(* p_argv); -+#else - *(ffi_arg *)argp = *(UINT32 *)(* p_argv); -+#endif - break; - - /* This can only happen with 64bit slots. */ diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 59c460af3b..2381c7d2c7 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -201,18 +201,16 @@ data types.") (define-public python (package (inherit python-2) - (version "3.3.5") + (version "3.4.3") (source (origin (method url-fetch) (uri (string-append "https://www.python.org/ftp/python/" version "/Python-" version ".tar.xz")) - (patches (list (search-patch "python-fix-tests.patch") - (search-patch "python-sqlite-3.8.4-test-fix.patch") - (search-patch "python-libffi-mips-n32-fix.patch"))) + (patches (list (search-patch "python-fix-tests.patch"))) (patch-flags '("-p0")) (sha256 (base32 - "1rdncc7g8g6f3lfdg33rli1yffbiq8z283xy4f5ksl1l8i49psdb")))) + "1f4nm4z08sy0kqwisvv95l02crv6dyysdmx44p1mz3bn6csrdcxm")))) (arguments (substitute-keyword-arguments (package-arguments python-2) ((#:tests? _) #t))) (native-search-paths -- cgit v1.3 From 0e05d01e4f579f4f4866528d53178506444974a9 Mon Sep 17 00:00:00 2001 From: 宋文武 Date: Tue, 14 Apr 2015 15:11:51 +0800 Subject: gnu: python: Use 'version-major+minor' to compute PYTHONPATH. Fixes a regression introduced in 08c0450. * gnu/packages/python.scm (python)[native-search-paths]: Use 'version-major+minor' to compute PYTHONPATH. --- gnu/packages/python.scm | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 2381c7d2c7..d64f6331d9 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -216,7 +216,9 @@ data types.") (native-search-paths (list (search-path-specification (variable "PYTHONPATH") - (files '("lib/python3.3/site-packages"))))))) + (files (list (string-append "lib/python" + (version-major+minor version) + "/site-packages")))))))) (define-public python-wrapper (package (inherit python) -- cgit v1.3 From feaae484998233fca1ec57ca50ea8225221b1815 Mon Sep 17 00:00:00 2001 From: 宋文武 Date: Mon, 20 Apr 2015 13:42:53 +0800 Subject: gnu: Add python-waf. * gnu/packages/python.scm (python-waf, python2-waf): New variables. --- gnu/packages/python.scm | 36 ++++++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index d64f6331d9..050c0de402 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -3508,3 +3508,39 @@ It is written entirely in Python.") (define-public python2-singledispatch (package-with-python2 python-singledispatch)) + +(define-public python-waf + (package + (name "python-waf") + (version "1.8.8") + (source (origin + (method url-fetch) + (uri (string-append "https://waf.io/" + "waf-" version ".tar.bz2")) + (sha256 + (base32 + "0b5q307fgn6a5d8yjia2d1l4bk1q3ilvc0w8k4isfrrx2gbcw8wn")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'build + (lambda _ + (zero? (begin + (system* "python" "waf-light" "configure") + (system* "python" "waf-light" "build"))))) + (replace 'check + (lambda _ + (zero? (system* "python" "waf" "--version")))) + (replace 'install + (lambda _ + (copy-file "waf" %output)))))) + (home-page "https://waf.io/") + (synopsis "Python-based build system") + (description + "Waf is a Python-based framework for configuring, compiling and installing +applications.") + (license bsd-3))) + +(define-public python2-waf + (package-with-python2 python-waf)) -- cgit v1.3 From ed377cc6cfb2cf3eb45c68a7939874fbad6eac59 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 28 Apr 2015 10:17:49 +0200 Subject: gnu: Add python2-backport-ssl-match-hostname. * gnu/packages/python.scm (python2-backport-ssl-match-hostname): New variable. --- gnu/packages/python.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 050c0de402..91ed9ce0df 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -301,6 +301,33 @@ etc. ") (define-public python2-babel (package-with-python2 python-babel)) +(define-public python2-backport-ssl-match-hostname + (package + (name "python2-backport-ssl-match-hostname") + (version "3.4.0.2") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/b/" + "backports.ssl_match_hostname/backports.ssl_match_hostname-" + version ".tar.gz")) + (sha256 + (base32 + "1bnn47ipvhy49n0m50v27lp4xj6sqdkdw676ypd7pawsn1zhwh87")))) + (build-system python-build-system) + (arguments `(#:python ,python-2)) + (inputs + `(("python2-setuptools" ,python2-setuptools))) + (home-page "https://pypi.python.org/pypi/backports.ssl_match_hostname") + (synopsis "Backport of ssl.match_hostname() function from Python 3.4") + (description + "This backport brings the ssl.match_hostname() function to users of +earlier versions of Python. The function checks the hostname in the +certificate returned by the server to which a connection has been established, +and verifies that it matches the intended target hostname.") + (license psfl))) + (define-public python-h5py (package (name "python-h5py") -- cgit v1.3 From 310d218f64f2521a3285311ade7c30a3066450f4 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 28 Apr 2015 10:18:22 +0200 Subject: gnu: Add python-tornado. * gnu/packages/python.scm (python-tornado, python2-tornado): New variables. --- gnu/packages/python.scm | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 91ed9ce0df..29b47f357c 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -3536,6 +3536,41 @@ It is written entirely in Python.") (define-public python2-singledispatch (package-with-python2 python-singledispatch)) +(define-public python-tornado + (package + (name "python-tornado") + (version "4.1") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/t/tornado/" + "tornado-" version ".tar.gz")) + (sha256 + (base32 "0a12f00h277zbifibnj46wf14801f573irvf6hwkgja5vspd7awr")))) + (build-system python-build-system) + (inputs + `(("python-certifi" ,python-certifi))) + (native-inputs + `(("python-setuptools" ,python-setuptools))) + (home-page "https://pypi.python.org/pypi/tornado/4.1") + (synopsis "Python web framework and asynchronous networking library") + (description + "Tornado is a Python web framework and asynchronous networking library, +originally developed at FriendFeed. By using non-blocking network I/O, +Tornado can scale to tens of thousands of open connections, making it ideal +for long polling, WebSockets, and other applications that require a long-lived +connection to each user.") + (license asl2.0))) + +(define-public python2-tornado + (let ((tornado (package-with-python2 python-tornado))) + (package (inherit tornado) + (inputs + `(("python2-backport-ssl-match-hostname" + ,python2-backport-ssl-match-hostname) + ,@(package-inputs tornado)))))) + (define-public python-waf (package (name "python-waf") -- cgit v1.3 From 90fc547fa026e197be45eff8a346a8fd19abe64e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 29 Apr 2015 15:03:24 +0200 Subject: gnu: Add python-sympy. * gnu/packages/python.scm (python-sympy, python2-sympy): New variables. --- gnu/packages/python.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 29b47f357c..98be765853 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -3446,6 +3446,32 @@ providing a clean and modern domain specific specification language (DSL) in Python style, together with a fast and comfortable execution environment.") (license license:expat))) +(define-public python-sympy + (package + (name "python-sympy") + (version "0.7.6") + (source + (origin + (method url-fetch) + (uri (string-append + "https://github.com/sympy/sympy/releases/download/sympy-" + version "/sympy-" version ".tar.gz")) + (sha256 + (base32 "19yp0gy4i7p4g6l3b8vaqkj9qj7yqb5kqy0qgbdagpzgkdz958yz")))) + (build-system python-build-system) + (native-inputs + `(("python-setuptools" ,python-setuptools))) + (home-page "http://www.sympy.org/") + (synopsis "Python library for symbolic mathematics") + (description + "SymPy is a Python library for symbolic mathematics. It aims to become a +full-featured computer algebra system (CAS) while keeping the code as simple +as possible in order to be comprehensible and easily extensible.") + (license bsd-3))) + +(define-public python2-sympy + (package-with-python2 python-sympy)) + (define-public python-testlib (package (name "python-testlib") -- cgit v1.3 From a3f61425a6051c4f7f7f4cfde0f639652fb006f8 Mon Sep 17 00:00:00 2001 From: Mark H Weaver Date: Thu, 7 May 2015 01:43:48 -0400 Subject: gnu: scons: Update to 2.3.4. * gnu/packages/python.scm (scons): Update to 2.3.4. --- gnu/packages/python.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 98be765853..848a53d1d9 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -1023,14 +1023,14 @@ syntax.") (define-public scons (package (name "scons") - (version "2.1.0") + (version "2.3.4") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/scons/scons-" version ".tar.gz")) (sha256 (base32 - "07cjn4afb2cljjrd3cr7xf062qq58z8q96f58z6yplhdyqafsfa1")))) + "0hdlci43wjz8maryj83mz04ir6rwcdrrzpd7cpzvdlzycqhdfmsb")))) (build-system python-build-system) (arguments ;; With Python 3.x, fails to build with a syntax error. -- cgit v1.3 From 12f8f9bb3e10d049d242bb005787c1d417f0404a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 29 Apr 2015 15:04:09 +0200 Subject: gnu: Add python-scikit-image. * gnu/packages/python.scm (python-scikit-image, python2-scikit-image): New variables. --- gnu/packages/python.scm | 39 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 848a53d1d9..3b9298e6e2 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -2065,6 +2065,45 @@ mining and data analysis.") (alist-delete "python-scipy" (package-propagated-inputs scikit)))))))) +(define-public python-scikit-image + (package + (name "python-scikit-image") + (version "0.11.3") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/s/scikit-image/scikit-image-" + version ".tar.gz")) + (sha256 + (base32 "0jz416fqvpahqyffw8plmszzfj669w8wvf3y9clnr5lr6a7md3kn")))) + (build-system python-build-system) + (propagated-inputs + `(("python-matplotlib" ,python-matplotlib) + ("python-networkx" ,python-networkx) + ("python-numpy" ,python-numpy) + ("python-scipy" ,python-scipy) + ("python-six" ,python-six) + ("python-pillow" ,python-pillow))) + (native-inputs + `(("python-cython" ,python-cython) + ("python-setuptools" ,python-setuptools))) + (home-page "http://scikit-image.org/") + (synopsis "Image processing in Python") + (description + "scikit-image is a collection of algorithms for image processing.") + (license bsd-3))) + +(define-public python2-scikit-image + (let ((scikit-image (package-with-python2 python-scikit-image))) + (package (inherit scikit-image) + (native-inputs + `(("python2-mock" ,python2-mock) + ,@(package-native-inputs scikit-image))) + (propagated-inputs + `(("python2-pytz" ,python2-pytz) + ,@(package-propagated-inputs scikit-image)))))) + (define-public python-cython (package (name "python-cython") -- cgit v1.3 From d072efcb6d58b580dc94267526d35780ad8e0417 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 29 Apr 2015 15:14:56 +0200 Subject: gnu: Add python-pandas. * gnu/packages/python.scm (python-pandas, python2-pandas): New variables. --- gnu/packages/python.scm | 38 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 38 insertions(+) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 3b9298e6e2..f876ccfca8 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -628,6 +628,44 @@ datetime module, available in Python 2.3+.") "Parse human-readable date/time text") (license asl2.0))) +(define-public python-pandas + (package + (name "python-pandas") + (version "0.16.0") + (source + (origin + (method url-fetch) + (uri (string-append "https://pypi.python.org/packages/source/p/" + "pandas/pandas-" version ".tar.gz")) + (sha256 + (base32 "1wfrp8dx1zcsry6f09ndza6qm1yr7f163211f4l9vjlnhxpxw4s0")))) + (build-system python-build-system) + (arguments + `(;; Three tests fail: + ;; - test_read_google + ;; - test_read_yahoo + ;; - test_month_range_union_tz_dateutil + #:tests? #f)) + (propagated-inputs + `(("python-numpy" ,python-numpy) + ("python-pytz" ,python-pytz) + ("python-dateutil" ,python-dateutil-2))) + (native-inputs + `(("python-nose" ,python-nose) + ("python-setuptools" ,python-setuptools))) + (home-page "http://pandas.pydata.org") + (synopsis "Data structures for data analysis, time series, and statistics") + (description + "Pandas is a Python package providing fast, flexible, and expressive data +structures designed to make working with structured (tabular, +multidimensional, potentially heterogeneous) and time series data both easy +and intuitive. It aims to be the fundamental high-level building block for +doing practical, real world data analysis in Python.") + (license bsd-3))) + +(define-public python2-pandas + (package-with-python2 python-pandas)) + (define-public python-tzlocal (package (name "python-tzlocal") -- cgit v1.3 From 35de1fbd909d0365ed20fe91e2815a35a74cdabe Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 29 Apr 2015 15:19:38 +0200 Subject: gnu: Add python-seaborn. * gnu/packages/python.scm (python-seaborn, python2-seaborn): New variables. --- gnu/packages/python.scm | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index f876ccfca8..e771e170d2 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -3523,6 +3523,41 @@ providing a clean and modern domain specific specification language (DSL) in Python style, together with a fast and comfortable execution environment.") (license license:expat))) +(define-public python-seaborn + (package + (name "python-seaborn") + (version "0.5.1") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/s/seaborn/seaborn-" + version ".tar.gz")) + (sha256 + (base32 "1236abw18ijjglmv60q85ckqrvgf5qyy4zlq7nz5aqfg6q87z3wc")))) + (build-system python-build-system) + (propagated-inputs + `(("python-pandas" ,python-pandas) + ("python-matplotlib" ,python-matplotlib) + ("python-scipy" ,python-scipy))) + (native-inputs + `(("python-setuptools" ,python-setuptools))) + (home-page "http://stanford.edu/~mwaskom/software/seaborn/") + (synopsis "Statistical data visualization") + (description + "Seaborn is a library for making attractive and informative statistical +graphics in Python. It is built on top of matplotlib and tightly integrated +with the PyData stack, including support for numpy and pandas data structures +and statistical routines from scipy and statsmodels.") + (license bsd-3))) + +(define-public python2-seaborn + (let ((seaborn (package-with-python2 python-seaborn))) + (package (inherit seaborn) + (propagated-inputs + `(("python2-pytz" ,python2-pytz) + ,@(package-propagated-inputs seaborn)))))) + (define-public python-sympy (package (name "python-sympy") -- cgit v1.3 From 4520354282de331f82064f52d49a51d5eb28ab5e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 21 May 2015 15:20:45 +0200 Subject: gnu: Add python-pyzmq. * gnu/packages/python.scm (python-pyzmq, python2-pyzmq): New variables. --- gnu/packages/python.scm | 37 ++++++++++++++++++++++++++++++++++++- 1 file changed, 36 insertions(+), 1 deletion(-) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index e771e170d2..5e4217a7a1 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -26,7 +26,7 @@ (define-module (gnu packages python) #:use-module ((guix licenses) - #:select (asl2.0 bsd-3 bsd-2 non-copyleft cc0 x11 x11-style + #:select (asl2.0 bsd-4 bsd-3 bsd-2 non-copyleft cc0 x11 x11-style gpl2 gpl2+ gpl3+ lgpl2.0+ lgpl2.1 lgpl2.1+ lgpl3+ psfl public-domain x11-style)) #:use-module ((guix licenses) #:select (expat zlib) #:prefix license:) @@ -45,6 +45,7 @@ #:use-module (gnu packages libffi) #:use-module (gnu packages maths) #:use-module (gnu packages multiprecision) + #:use-module (gnu packages networking) #:use-module (gnu packages ncurses) #:use-module (gnu packages openssl) #:use-module (gnu packages perl) @@ -3744,3 +3745,37 @@ applications.") (define-public python2-waf (package-with-python2 python-waf)) + +(define-public python-pyzmq + (package + (name "python-pyzmq") + (version "14.6.0") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/p/pyzmq/pyzmq-" + version ".tar.gz")) + (sha256 + (base32 "1frmbjykvhmdg64g7sn20c9fpamrsfxwci1nhhg8q7jgz5pq0ikp")))) + (build-system python-build-system) + (arguments + `(#:configure-flags + (list (string-append "--zmq=" (assoc-ref %build-inputs "zeromq"))) + ;; FIXME: You must build pyzmq with 'python setup.py build_ext + ;; --inplace' for 'python setup.py test' to work. + #:tests? #f)) + (inputs + `(("zeromq" ,zeromq))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("python-nose" ,python-nose) + ("python-setuptools" ,python-setuptools))) + (home-page "http://github.com/zeromq/pyzmq") + (synopsis "Python bindings for 0MQ") + (description + "PyZMQ is the official Python binding for the ZeroMQ messaging library.") + (license bsd-4))) + +(define-public python2-pyzmq + (package-with-python2 python-pyzmq)) -- cgit v1.3 From 12c270ddd471a18a69ecfa016644c98734b3e601 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 21 May 2015 16:19:00 +0200 Subject: gnu: Add python-click. * gnu/packages/python.scm (python-click, python2-click): New variables. --- gnu/packages/python.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 5e4217a7a1..a3f5e1ccea 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -1637,6 +1637,33 @@ is used by the Requests library to verify HTTPS requests.") (define-public python2-certifi (package-with-python2 python-certifi)) +(define-public python-click + (package + (name "python-click") + (version "4.0") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/c/click/click-" + version ".tar.gz")) + (sha256 + (base32 "0294x9g28w6zgswl0rsygkwi0wf6n480gf7fiiw5f9az3xhh77pl")))) + (build-system python-build-system) + (native-inputs + `(("python-setuptools" ,python-setuptools))) + (home-page "http://click.pocoo.org") + (synopsis "Command line library for Python") + (description + "Click is a Python package for creating command line interfaces in a +composable way with as little code as necessary. Its name stands for +\"Command Line Interface Creation Kit\". It's highly configurable but comes +with sensible defaults out of the box.") + (license bsd-3))) + +(define-public python2-click + (package-with-python2 python-click)) + (define-public python-requests (package (name "python-requests") -- cgit v1.3 From 5394a6a653e7338d73553eb77fa7c11c17562d3e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 21 May 2015 16:24:05 +0200 Subject: gnu: Add python-redis. * gnu/packages/python.scm (python-redis, python2-redis): New variables. --- gnu/packages/python.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index a3f5e1ccea..99c20ef07d 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -2170,6 +2170,33 @@ mining and data analysis.") `(("python2-pytz" ,python2-pytz) ,@(package-propagated-inputs scikit-image)))))) +(define-public python-redis + (package + (name "python-redis") + (version "2.10.3") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/r/redis/redis-" + version ".tar.gz")) + (sha256 + (base32 "1701qjwn4n05q90fdg4bsg96s27xf5s4hsb4gxhv3xk052q3gyx4")))) + (build-system python-build-system) + ;; Tests require a running Redis server + (arguments '(#:tests? #f)) + (native-inputs + `(("python-setuptools" ,python-setuptools) + ("python-pytest" ,python-pytest))) + (home-page "https://github.com/andymccurdy/redis-py") + (synopsis "Redis Python client") + (description + "This package provides a Python interface to the Redis key-value store.") + (license license:expat))) + +(define-public python2-redis + (package-with-python2 python-redis)) + (define-public python-cython (package (name "python-cython") -- cgit v1.3 From 748cef5be9c69978b5c70575340702d8df73f84a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 21 May 2015 16:24:55 +0200 Subject: gnu: Add python-rq. * gnu/packages/python.scm (python-rq, python2-rq): New variables. --- gnu/packages/python.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) (limited to 'gnu/packages/python.scm') diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 99c20ef07d..9da91111f6 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -2197,6 +2197,35 @@ mining and data analysis.") (define-public python2-redis (package-with-python2 python-redis)) +(define-public python-rq + (package + (name "python-rq") + (version "0.5.2") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/r/rq/rq-" + version ".tar.gz")) + (sha256 + (base32 "0b0z5hn8wkfg300hx7816csgv3bcfamlr29fi3yzgqmpqxwj3fix")))) + (build-system python-build-system) + (propagated-inputs + `(("python-click" ,python-click) + ("python-redis" ,python-redis))) + (native-inputs + `(("python-setuptools" ,python-setuptools))) + (home-page "http://python-rq.org/") + (synopsis "Simple job queues for Python") + (description + "RQ (Redis Queue) is a simple Python library for queueing jobs and +processing them in the background with workers. It is backed by Redis and it +is designed to have a low barrier to entry.") + (license bsd-2))) + +(define-public python2-rq + (package-with-python2 python-rq)) + (define-public python-cython (package (name "python-cython") -- cgit v1.3