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* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.7.2.
[arguments] <test-flags>: Limit parallel tests up to 8 thread; all tests
passed, don't skip any.
[native-inputs]: Add pkg-config.
Change-Id: I4ef534538ba83feb6d8e2bfb91f766e5dfd157e8
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-check.scm (python-nbval):
[arguments] <test-flags>: Skip some more tests to reduce closure size.
[propagated-inputs]: Remove python-six.
[native-inputs]: Remove python-pytest-cov, python-sympy, and
python-wheel.
Change-Id: I3e3e4378a837d62c553ff432aecf45d266589aee
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pydantic-2): Deprecate variable.
* gnu/packages/astronomy.scm (python-czml3, python-edps, python-hvpy):
[propagated-inputs]: Remove python-pydantic-2; add python-pydantic.
* gnu/packages/cybersecurity.scm (gallia):
[inputs]: Remove python-pydantic-2; add python-pydantic.
* gnu/packages/databases.scm (python-prisma)[propagated-inputs]:
Remove python-pydantic-2; add python-pydantic.
(python-tortoise-orm, aerich)[native-inputs]: Remove python-pydantic-2;
add python-pydantic.
* gnu/packages/django.scm (python-django-ninja)[propagated-inputs]:
Remove python-pydantic-2; add python-pydantic.
* gnu/packages/finance.scm (python-schwifty)[native-inputs]: Remove
python-pydantic-2; add python-pydantic.
* gnu/packages/games.scm (tuxemon)[propagated-inputs]: Remove
python-pydantic-2; add python-pydantic.
* gnu/packages/machine-learning.scm (python-spacy, python-thinc):
[propagated-inputs]: Remove python-pydantic-2; add python-pydantic.
* gnu/packages/maths.scm (python-libensemble)[propagated-inputs]: Remove
python-pydantic-2; add python-pydantic.
* gnu/packages/protobuf.scm (python-pure-protobuf)[native-inputs]:
Remove python-pydantic-2; add python-pydantic.
* gnu/packages/python-check.scm (python-inline-snapshot)[native-inputs]:
Remove python-pydantic-2; add python-pydantic.
* gnu/packages/python-science.scm (python-iminuit):[native-inputs]:
Remove python-pydantic-2; add python-pydantic.
(python-pandera, python-vaex-core)[propagated-inputs]: Remove
python-pydantic-2; add python-pydantic.
* gnu/packages/python-web.scm: (python-cloudpathlib, python-huggingface-hub):
[native-inputs]: Remove python-pydantic-2; add python-pydantic.
(python-aws-sam-translator, python-weasel, python-openai,
python-fastapi, python-fastapi-csrf-protect,
python-fastapi-pagination-minimal, python-fastapi-pagination):
[propagated-inputs]: Remove python-pydantic-2; add python-pydantic.
* gnu/packages/python-xyz.scm: (python-safety-schemas,
python-pytoolconfig, python-pydantic-cli, python-pydantic-settings,
python-confection, python-safety)[propagated-inputs]: Remove
python-pydantic-2; add python-pydantic.
(python-deepdiff, python-lief)[native-inputs]: Remove
python-pydantic-2; add python-pydantic.
Change-Id: I20842162ae8a6c0abd54e4ef1fc676f928541184
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pydantic-1): New variable.
Change-Id: Ifc4b64d7c1b34a083c35a0cad6be8da4d7e6c20b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pydantic): Update to 2.12.5.
[propagated-inputs]: Add python-annotated-types, python-pydantic-core, and
python-typing-inspection.
[native-inputs]: Remove python-setuptools and python-wheel; add tzdata-for-tests,
python-dirty-equals, python-faker, python-hatch-fancy-pypi-readme,
python-hatchling, python-jsonschema, python-pytest-benchmark,
python-pytest-examples, and python-pytest-run-parallel.
Change-Id: Ic844bac49a97736c1f2e2e01f7b732c0e2c36ea0
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pydantic-core): Update to
2.41.5. Enable tests.
[build-system]: Switch to pyproject-build-system.
[arguments] <modules>: Adjust for pyproject-build-system.
<phases>: Add 'prepare-cargo-build-system, and 'patch-pyproject.toml.
[native-inputs]: Add python-dirty-equals, python-pytest,
python-pytest-benchmark, python-pytest-mock, python-pytest-timeout,
python-typing-inspetion, python-tzdata, rust, and `(,rust "cargo")).
* gnu/packages/rust-crates.scm: (rust-cc-1.0.101, rust-jiter-0.11.1,
rust-lexical-parse-float-1.0.5, rust-lexical-parse-integer-1.0.5,
rust-lexical-util-1.0.6, rust-libc-0.2.155, rust-portable-atomic-1.6.0,
rust-proc-macro2-1.0.86, rust-pyo3-0.26.0,
rust-pyo3-build-config-0.26.0, rust-pyo3-ffi-0.26.0,
rust-pyo3-macros-0.26.0, rust-pyo3-macros-backend-0.26.0,
rust-quote-1.0.36, rust-rustversion-1.0.17, rust-speedate-0.17.0,
rust-syn-2.0.82): New variables.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs):
{python-pydantic-core}: Refresh the list.
Change-Id: Id861b1bdebad583c9d34a708ee229c61d7c2a799
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-check.scm (python-pytest-run-parallel): New variable.
Change-Id: I680f2dcc11e3457a3b05ebe65852a7cfd6c2df53
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-typing-inspection): New variable.
Change-Id: I1823a5683846b7c3620ed42c157bda437f7451f0
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-science.scm (python-dask): Update to 2025.11.0.
[arguments] <test-flags>: Do not max out availalbe thread, keep them on
4 for stability; rework skipped/ignored tests.
<phases>: Remove 'versioneer, and 'patch-pyproject.
[propagated-inputs]: Remove python-dask-expr; add python-lz4 and
python-pyarrow.
[native-inputs]: Remove python-importlib-metadata and python-versioneer;
add python-pytest-asyncio, python-pytest-mock, python-pytest-timeout,
python-setuptools-scm-next, and tzdata-for-tests.
Change-Id: I8234ad1923a2a228c9c240bb34c9e1c9dfcbbd55
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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This particular version is required for Dask update, I try to avoid
updating python-setuptools-scm to prevent triggering 8k+ rebuilds.
* gnu/packages/python-build.scm (python-setuptools-scm-next):
Undeprecate variable and set to 9.2.2 version.
Change-Id: I0e7f879bcf4f58ad9741ff4c7efb039c350f0014
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-compression.scm (python-blosc):
[propagated-inputs]: Remove python-scikit-build.
[native-inputs]: Remove python-numpy; add python-numpy-1 and
python-scikit-build.
Change-Id: I30da797eea3b92909ba707af41cde90062d974bf
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-h5py): Update to 3.15.1.
[arguments] <test-flags>: Skip test recruiting the build with MPI
support.
<phases>: Remove 'relax-gcc-14-strictness; do not delete/implement custom
'check, use default.
[propagated-inputs]: Remove python-six.
[native-inputs]: Remove python-ipython, python-pytest-mpi, and
python-wheel.
Change-Id: Iee3bdaa9f3950404791e770ee600da1650842496
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/check.scm (python-pytest-regressions): Move from here ...
* gnu/packages/python-check.scm: ... to here.
Change-Id: I829667aa3cadd8a762194e1948c88b72e6a4eeda
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/check.scm (python-pytest-regressions): Update to 2.8.3.
[arguments] <test-flags>: Remove requirements of expensive inputs.
[native-inputs]: Remove python-numpy, python-pandas, and python-pytest; add
python-pytest-bootstrap.
Change-Id: I482521782c8cd21c8a86ed69c11a8efa538326e4
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-science.scm (python-scipy): Update to 1.16.3.
[arguments] <test-flags>: Use Pytest directly, as seen in project's
GitHub Actions.
<phases>: Remove 'apply-i686-patch; add 'relax-requirements,
'hide-gfortran; rework custom 'check to run Pytest directly.
[native-inputs]: Remove gcc, python-cython-0; add python-cython, and
python-hypothesis.
[inputs]: Remove pybind11-2.10; add boost, pybind11, qhull, and xsimd.
* gnu/packages/patches/python-scipy-i686.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Deregister patch.
Change-Id: Ibc38577b9b0c915e54ca3b3096727c9c2f82e19c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-msgpack): Update to 1.1.2.
Change-Id: Ic69b1b9f8fc9d6da32c00584e86de42af167ec0c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-science.scm (python-pandas-2): Update to 2.3.3 and
rename to python-pandas.
[arguments] <test-flags>: Rework skipped tests.
<phases>: Remove 'pre-check, and 'patch-which; use custom 'check.
[inputs]: Remove which, it's implemanted with Python's `shutil.which()'.
[propagated-inputs]: Remove python-jinja2, python-matplotlib,
python-openpyxl, python-xlrd, and python-xlsxwriter.
[native-inputs]: Remove python-beautifulsoup4, python-cython,
python-html5lib, python-matplotlib, python-openpyxl,
python-pytest-localserver, and python-pytest-mock; add meson and
tzdata-for-tests.
(python-pandas-2): Deprecate variable in favor of python-pandas.
Change-Id: Ib4aefbbc33f46f793430ac396cbe5e6c4107ec2f
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.10.8.
[source]: Fetch from git and delete patches.
[#:configure-flags]: New argument.
[#:test-flags]: Consolidate all test arguments here, adding "-n" and
"--pyargs". Update skipped tests regexps.
[#:phases] {fix-and-disable-failing-tests}: Rename to...
{patch-commands}: ... this, and streamline phase.
{patch-dlopen}: Update patched file name.
{configure-environment}: Streamline.
{chdir}: New phase.
[native-inputs]: Add meson-python.
* gnu/packages/patches/python-matplotlib-fix-legend-loc-best-test.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
Change-Id: Ib002aae96559efa625d2059c783536f77f4170a5
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-web.scm (python-httptools): Update to 0.7.1.
Change-Id: Iae65ddeff91abec3029403998469ae53547f295b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-numpy-2): Deprecated in favor of
python-numpy.
(python-omero-py, python-numexpr) [propagated-inputs]: Remove
python-numpy-2; add python-numpy.
* gnu/packages/algebra.scm (kissfft)
[native-inputs]: Remove python-numpy-2; add python-numpy.
* gnu/packages/image.scm (vigra):
[inputs]: Remove python-numpy-2; add python-numpy.
* gnu/packages/machine-learning.scm (python-spacy):
[propagated-inputs]: Remove python-numpy-2; add python-numpy.
* gnu/packages/machine-learning.scm (python-thinc):
[propagated-inputs]: Remove python-numpy-2; add python-numpy.
* gnu/packages/maths.scm (python-blis):
[native-inputs]: Remove python-numpy-2; add python-numpy.
Change-Id: Ie6041de76a227246ec63b0efa04d293dcc22b40b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-numpy): Move definition from
python-numpy-2 here.
(python-numpy-1): New variable, inherit from python-numpy.
Change-Id: I78bf7cae09b5bea59b536fe4ba14649a3398539c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-cython-next): New variable.
Change-Id: I9bc2e1881edb4113f5919d39a6481067da986045
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-cython): Update to 3.1.7.
Change-Id: I0771e680017223c0ef0fee01fc30edda0e274ebb
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-build.scm (python-setuptools-79): New variable.
Change-Id: I4a20b5e1fc9a40749b56d193b50b823ba75cba86
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/engineering.scm (pythonscad): Reindent.
Change-Id: If1244fb065e8dad009ad61af1570c398c5242442
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/engineering.scm (pythonscad): Update to 0.8.4.
[source]: Use version tag instead of commit hash.
[arguments]: Remove OPENSCAD_COMMIT configure flag. Fix CMakeLists.txt
substitution to use OpenSCADLibInternal instead of OpenSCAD.
Change-Id: I08b0ac1488fa958912a77292b8bcef15bde653e1
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/video.scm (mkvtoolnix): Update to 97.0
[inputs]: Replace boost-1.83 with boost.
Change-Id: I5dd142e9ef2124c52d1b45d3e8d642eaf6c472ac
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/gps.scm (gpsd)[inputs]: Replace qtbase-5 by qtbase.
[arguments]<#:scons-flags>: Drop "qt_versioned=5".
Change-Id: I2a13f2079975e89ae264e2269afbf2c4d4a07551
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/gps.scm (gpsd): Update to 3.27.3.
Change-Id: Ic88b76a2e3ab0d13eb20016d3d8e0ef24bad11da
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/kde-education.scm (marble-qt): Deprecate and rename to...
(marble): ...this.
* gnu/packages/kde-graphics.scm (digikam)[inputs]: Adapt.
Change-Id: Ib521c4a2d058b8b6b68c3e1359c73485877c25ea
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/gnome.scm (libgit2-glib): Update to 1.2.1.
Change-Id: I8d050854f4a00a6c19bdff83d54e25c3ac582bc0
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/sagemath.scm (sage)[inputs]: Add python-cvxopt,
python-lrcalc, python-mpmath, python-networkx, python-primecountpy,
python-scipy, python-sympy.
Change-Id: I6531b2c4e6ac14b1eed838bc51035ce84621a349
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/disk.scm (ddrescue): Update to 1.30.
Change-Id: I9fb74ed0dce743accb94ff9a23c4ea64ff55f631
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/wget.scm (wget2): Update to 2.2.1.
Change-Id: I3abdf8a7425e46c8f2240b2e8f803a06a88b9e40
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/patches/bmake-run-check-separately.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/build-tools.scm (bmake)[source]: Use it.
[arguments/<#:tests, #:test-target>: Set to enable tests.
Change-Id: I7e270e1c74b475813cb9c623f2b8a37e1f09a0b9
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/build-tools.scm (bmake): Update to 20251111.
[native-inputs]: Add bc.
[arguments]<#:make-flags>: Skip tests via BROKEN_TESTS.
<#:configure-flags>: Add a flag to use sh as defshell.
<#:phases>: Add 'fix-shell-detection phase and switch to sh as defshell.
Change-Id: Ie469a5a8e2f868aecb7bb620a5127f710c81ae86
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/terminals.scm (asciinema): Update to 3.0.1.
[source]: Change to url-fetch.
[build-system]: Change to cargo-build-system.
[native-inputs]: Remove python-pytest, python-setuptools and python-wheel.
Add python-minimal.
[inputs]: Change to cargo-inputs.
[build-phases]: Remove unnecessary phase.
* gnu/packages/rust-crates.scm (asciinema): Add dependencies.
Change-Id: Ic4197a6a03aad5b309d9b5b6bbc39c094350d86f
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/books.scm (xiphos)[native-inputs]: Replace atk
by at-spi2-core.
Change-Id: Ie945affc7fd71fedb882872206ad28f399f947fa
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/texlive.scm (%texlive-date, %texlive-year,
texlive-extra-src, texlive-texmf-src, texlivebin, texlivetexmf): Delete
variables.
(texlive): Redefine as texlive-scheme-full.
* gnu/packages/books.scm: Remove module inclusion.
* doc/guix.texi: Remove documentation for monolithic texlive.
Change-Id: I23837ca29cbbc080833be122972dcfe31c0fd1bb
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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Fixes <https://issues.guix.gnu.org/75458>.
Fixes a bug whereby bootloader, image, platform, etc. modules would be
searched for in locations other than the current profile, possibly leading to
incompatible files being loaded. More generally, this bug would break
statelessness: depending on what happens to be available in $GUILE_LOAD_PATH,
some modules would or would not be loaded.
* guix/describe.scm (modules-from-current-profile): New procedure.
* gnu/bootloader.scm (bootloader-modules): Use it instead of ‘all-modules’.
* gnu/system/image.scm (image-modules): Likewise.
(not-config?): Rename to…
(neither-config-nor-git?): … this, and add (guix git). Adjust users.
* guix/import/utils.scm (build-system-modules): Likewise.
* guix/platform.scm (platform-modules): Likewise.
* guix/upstream.scm (importer-modules): Likewise.
Change-Id: I8ac55a5bcdf54990665c70d0aa558b9b2c2548d4
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #4859
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/libunistring.scm (libunistring)[arguments]:
When building for MinGW, add phase `patch-tests/nanosleep.c'.
Change-Id: Ia76c342f2bbe7873367b5e59168f7180b845f4c3
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/aidc.scm (zint) [build-system]: Switch to cmake-build-system.
[#:qtbase]: Delete argument.
[#:configure-flags]: Remove "-DZINT_QT6=ON".
[native-inputs]: Remove qttools.
[inputs]: Remove qtsvg.
* gnu/packages/aidc.scm (zint-with-qt): New variable.
Fixes: #4953
Change-Id: Ib71783ffce585b01f4d72e618fba0bf22167c5a0
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/aidc.scm (zint): Update to 2.16.0.
Change-Id: I5f1173d2afe49e3f8e566ca2cdb8091c52f9c873
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/package-management.scm (guix-modules): Update to 0.3.0.
Change-Id: Idb0fe7d46f0832bd01c17bc2ae4edcdab35925f7
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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This is a followup to 8492a3c8962664db4bd0e7475f63be0ef59db87a.
* gnu/system/hurd.scm (%base-services/hurd): Replace
‘syslog-service-type’ by ‘shepherd-system-log-service-type’.
Change-Id: I3e12087a04f06210bd10b649b29fcf9949c5aa35
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #2659
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/patches/hurd-streamio-select.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/hurd.scm (hurd): Add patch.
Change-Id: I608380fbeab50ebc2e631488488aabf63e6483b4
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/patches/gnumach-kmsg-overflow.patch: New patch
* gnu/local.mk (dist_path_DATA): Register patch.
* gnu/packages/hurd.scm (gnumach): Add the patch.
Change-Id: Ibc75e9374426fe4aacbc94c1265d7dbb77386afa
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/ssh.scm (clustershell): Update to 1.9.3.
[native-inputs]: Remove python-wheel.
Change-Id: I027d5a3c2a6734e18442d0cd6f7444828b895a0d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/ssh.scm (webssh): Update to 1.6.3.
[native-inputs]: Remove python-wheel.
Change-Id: Ie26495f775d8b77f4a458917b8537beb5b060459
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/ssh.scm (webssh)[arguments]: Disable #:tests?.
Change-Id: I00b802face9cf7b46cf07d077a4682ff5c202d4a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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