summaryrefslogtreecommitdiff
path: root/gnu
AgeCommit message (Collapse)Author
2026-01-25gnu: r-rtracklayer: Update to 1.70.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.70.1. Change-Id: I3de097129c278a8667323f23f001a0788dac8fec Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-rhdf5: Update to 2.54.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.54.1. Change-Id: I923a8119848614871fab5eef520a9e87ac71fd1a Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-rcy3: Update to 2.30.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rcy3): Update to 2.30.1. Change-Id: I805ed3b33d5a51b02a8a8d2a376e23fdab8e53ad Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-gsva: Update to 2.4.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gsva): Update to 2.4.4. [propagated-inputs]: Remove r-delayedmatrixstats; add r-memuse. Change-Id: Ibcef712b3af99d367a84a45461e041b3a3ba4980 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-genomicranges: Update to 1.62.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.62.1. Change-Id: I63bc5e3e2d55227f6988f76c9ca2684eb501a703 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-genomeinfodb: Update to 1.46.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.46.2. Change-Id: I68b54eec8c36cd149133f9c7827a6d544180529c Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-enhancedvolcano: Update to 1.28.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-enhancedvolcano): Update to 1.28.2. [propagated-inputs]: Add r-scales. Change-Id: I5b32e6f2dfb78380dd053bc8fbae763c9a467133 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-edger: Update to 4.8.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-edger): Update to 4.8.2. Change-Id: Ie8020f24945f4f601d8ea054d9136eebffc1f0d1 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-immapex: Update to 1.4.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-immapex): Update to 1.4.3. Change-Id: Ic2bb78f46701bd20818d0f85908a9f2dce9f80c1 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-escape: Update to 2.6.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-escape): Update to 2.6.2. Change-Id: I27bb75063ae4a294bced8a65c5e2b0cd2d959d30 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-atena: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-atena): Update to 1.16.1. Change-Id: I2ec9271dc5b01af0cf24a319082beb933d978882 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-anvil: Update to 1.22.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.22.3. Change-Id: I53bcec395deb1cceb34646558c5a76b94140497e Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-systempiperdata: Update to 2.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-systempiperdata): Update to 2.14.2. Change-Id: I204b83fdb779970833e35698ab00b5cf3097ac98 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-reactome-db: Update to 1.95.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.95.0. Change-Id: Ie3095869415bf010a3071b0d4339d5f66c65c898 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-txdbmaker: Update to 1.6.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-txdbmaker): Update to 1.6.2. [properties]: Record one more package in updater-extra-native-inputs. Change-Id: Ie25a9043e7b02ee75e619140fbf3289185209b99 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-screpertoire: Update to 2.6.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-screpertoire): Update to 2.6.2. [arguments]: Disable more tests. Change-Id: I0818c1220c08f7a9309f7106e1661ff6ea8a058b Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: Add r-tidydr.Ricardo Wurmus
* gnu/packages/cran.scm (r-tidydr): New variable. Change-Id: I6f1df1135799abdb88c1a9fd517ee4bda70b80ff Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-tidyr: Update to 1.3.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tidyr): Update to 1.3.2. [native-inputs]: Add r-data-table. Change-Id: I336a5d28a25f7332484ab100dc0d584c82246760 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-rcpparmadillo: Update to 15.2.3-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 15.2.3-1. Change-Id: I6ae07a5da82f7d54f94f9eb6a3a1af32b0f2cd85 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-tibble: Update to 3.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tibble): Update to 3.3.1. Change-Id: I2e21659aa9a735db33f9dd4e95b3d57034f3f3de Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-rlang: Update to 1.1.7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rlang): Update to 1.1.7. Change-Id: I294e0bf7716a98d985dc3638b43bbbe5c571de28 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-tesseract: Update to 5.2.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-tesseract): Update to 5.2.4. Change-Id: I4efddb10ea2da028f07120bbd910d50a1fbe166b Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-vgam: Update to 1.1-14.Ricardo Wurmus
* gnu/packages/cran.scm (r-vgam): Update to 1.1-14. Change-Id: I88acba25a1ddaf11df3683898f2eeb065cf034f2 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-delaporte: Update to 8.4.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-delaporte): Update to 8.4.3. Change-Id: I3599fa6ba58c4f53b4e703c4f29eb5bcdc254fde Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-stars: Update to 0.7-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-stars): Update to 0.7-0. Change-Id: I5d93bba6b7cc827f404e3b158cb3893bfca73ad2 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-highlight: Update to 0.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-highlight): Update to 0.5.2. Change-Id: Ie80492b9656e59e1f90b0263ba5f691430a6290f Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-mlr3tuning: Update to 1.5.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3tuning): Update to 1.5.1. Change-Id: Id5a3cd491ee555aabe503e91c3132f4aa9ca111f Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-mlr3learners: Update to 0.14.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.14.0. Change-Id: I091cbc18f2e6dc992051c6e9c3e1abeeefd524e8 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-mlr3: Update to 1.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3): Update to 1.3.0. [native-inputs]: Remove r-callr; add r-future-callr. Change-Id: I95c3b1e6fad8e9349a957104c705837ba6dbf146 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-seurat: Update to 5.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-seurat): Update to 5.4.0. [propagated-inputs]: Remove r-leidenbase. Change-Id: Id47e87104046e60ffafcb7dd2bfb123b4b3b2fc2 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-seuratobject: Update to 5.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-seuratobject): Update to 5.3.0. Change-Id: Id948b1f2dc7946c68feb962f4ad666276675b90c Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-qtl: Update to 1.74.Ricardo Wurmus
* gnu/packages/cran.scm (r-qtl): Update to 1.74. Change-Id: I85d588ae6a5a0225f311e759de1bbdfbbdff705b Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-lsa: Update to 0.73.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-lsa): Update to 0.73.4. Change-Id: Ia185a6241791f922a7f0415ae372f9e1daadee15 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-infer: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-infer): Update to 1.1.0. [propagated-inputs]: Add r-withr. Change-Id: I3fcec413969c22a20f081f9f713edf512fd17070 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-parsnip: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-parsnip): Update to 1.4.1. Change-Id: I3cd9d5d00e54603a0be1a3831ae5098b947a39e9 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-tidypredict: Update to 1.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-tidypredict): Update to 1.0.1. [propagated-inputs]: Add r-jsonlite. Change-Id: Ia456329dba312110511e6d6a7d65e25b5ded220c Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-nanoarrow: Update to 0.7.0-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-nanoarrow): Update to 0.7.0-2. Change-Id: Id91a8b49f2e076eb1caea3bdefdba2fd01d39a23 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-clusterr: Update to 1.3.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-clusterr): Update to 1.3.6. Change-Id: Ia13d0a6425bd52fea7856b5d91445f2d72e7132d Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-spatstat-utils: Update to 3.2-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-utils): Update to 3.2-1. Change-Id: I069338d3125cec5f416afaae3343e0969077a3c3 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-shapforxgboost: Update to 0.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-shapforxgboost): Update to 0.2.0. Change-Id: I1dc22b7165fd1348e5d3a7e7614662b751c798ec Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-projpred: Update to 2.10.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-projpred): Update to 2.10.0. [propagated-inputs]: Add r-reformulas. [native-inputs]: Remove r-callr; add r-future-callr. Change-Id: I523f743f8a27fcfcf2b5f459a9cb652228d4ad89 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-kendall: Update to 2.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-kendall): Update to 2.2.2. Change-Id: I6294706a1c3e97f8d20783fb68caf84b49ec479a Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-rstantools: Update to 2.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstantools): Update to 2.6.0. Change-Id: I86ec72147d54c63ec7f50c0afed18792be3505b6 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-rsconnect: Update to 1.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rsconnect): Update to 1.7.0. Change-Id: Ib65f497638ccdb9da277a25b1dba64414a427822 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-butcher: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-butcher): Update to 0.4.0. Change-Id: Ie77049f8b3a306468cf7dc515fc1bb674a18b986 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-polycor: Update to 0.8-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-polycor): Update to 0.8-2. Change-Id: Icaf38c5ea5a6160483071297f4227c2cb9ca01cc Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-forecast: Update to 9.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-forecast): Update to 9.0.0. [native-inputs]: Add r-testthat. Change-Id: I26099a6ca37ecaa01fd35a40f6a4a9c6c38e3957 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-knn-covertree: Update to 1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-knn-covertree): Update to 1.1. Change-Id: Ifb64ded6a782c8d4a87002fec6eedd96513f920f Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-anthropometry: Update to 1.21.Ricardo Wurmus
* gnu/packages/cran.scm (r-anthropometry): Update to 1.21. [propagated-inputs]: Remove r-biclust. Change-Id: I6c24d0065b2589bb247b0d85254890b69cce298c Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: r-imager: Update to 1.0.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-imager): Update to 1.0.8. Change-Id: I8a914fe79e7bec185221a9ca8f36ab3dea6d3df7 Signed-off-by: Rutherther <rutherther@ditigal.xyz>