summaryrefslogtreecommitdiff
path: root/gnu
AgeCommit message (Collapse)Author
2026-04-28gnu: r-ggpicrust2: Update to 2.5.12.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 2.5.12. Change-Id: Ie625e6082c6e6ff615e5655ef4e99f92d968f574
2026-04-28gnu: r-samr: Update to 3.0.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-samr): Update to 3.0.1. Change-Id: Ia662ec72bbd8c9c28c954e5a57137b14d9627def
2026-04-28gnu: Add r-gaupro.Ricardo Wurmus
* gnu/packages/cran.scm (r-gaupro): New variable. Change-Id: I65995b68c25c12b58bc718d74d2d40f7fc7327f9
2026-04-28gnu: Add r-mixopt.Ricardo Wurmus
* gnu/packages/cran.scm (r-mixopt): New variable. Change-Id: Ie9e8be903bfac9a1f8b0547b98a26d5e98445ed4
2026-04-28gnu: Add r-contourfunctions.Ricardo Wurmus
* gnu/packages/cran.scm (r-contourfunctions): New variable. Change-Id: Ib05b992fcff568c1c9f16191784d8c76bea80502
2026-04-28gnu: Add r-xmlrpc2.Ricardo Wurmus
* gnu/packages/cran.scm (r-xmlrpc2): New variable. Change-Id: Ifab09184f73ff1bb7dbfac11426a2b0126c095d7
2026-04-28gnu: r-optparse: Update to 1.8.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-optparse): Update to 1.8.2. [properties]: Remove updater-extra-native-inputs. [propagated-inputs]: Remove r-getopt. [native-inputs]: Add r-rmarkdown. Change-Id: I6da35779b7fcf10e25db70de0e422ced2dcb8b4f
2026-04-28gnu: Add r-splitfngr.Ricardo Wurmus
* gnu/packages/cran.scm (r-splitfngr): New variable. Change-Id: Ica529377b0db12028df20109c0832da878147865
2026-04-28gnu: Add r-lbfgs.Ricardo Wurmus
* gnu/packages/cran.scm (r-lbfgs): New variable. Change-Id: Ibcb6730d72419673214c35c3d025b7934653f5b4
2026-04-28gnu: Add r-testthatmulti.Ricardo Wurmus
* gnu/packages/cran.scm (r-testthatmulti): New variable. Change-Id: Ie52b482dee3645f2c899968b022a8b4af5b5c7fe
2026-04-28gnu: r-detectseparation: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-detectseparation): Update to 0.4.0. [propagated-inputs]: Add r-roi-plugin-alabama, r-roi-plugin-ecos, r-roi-plugin-glpk, and r-roi-plugin-neos. [native-inputs]: Add r-tinytest. Change-Id: I163baa560b16103e5c7393e36e9d914e238a336f
2026-04-28gnu: Add r-roi-plugin-neos.Ricardo Wurmus
* gnu/packages/cran.scm (r-roi-plugin-neos): New variable. Change-Id: Ic9dff65cf7a6fb0b8decc8f298cba03de5ed2a3f
2026-04-28gnu: Add r-roi-plugin-glpk.Ricardo Wurmus
* gnu/packages/cran.scm (r-roi-plugin-glpk): New variable. Change-Id: I7494d76df73a9c367e8897362acea174bb1629b4
2026-04-28gnu: Add r-roi-plugin-ecos.Ricardo Wurmus
* gnu/packages/cran.scm (r-roi-plugin-ecos): New variable. Change-Id: Ie7830147d142873a526b495cc6b1d6b4362816e8
2026-04-28gnu: Add r-roi-plugin-alabama.Ricardo Wurmus
* gnu/packages/cran.scm (r-roi-plugin-alabama): New variable. Change-Id: If92353f459bf8ec46a8c46895f8a15683cca6c41
2026-04-28gnu: openjdk25: Enable build of i686 variant.Ricardo Wurmus
* gnu/packages/java.scm (openjdk25)[arguments]: Conditionally add configure flags to enable i686 port; conditionally replace 'install and 'install-libjvm phases. Change-Id: Ie436812341a4b02f61034c5142f396d16f3da17f
2026-04-28gnu: openjdk24: Enable build of i686 variant.Ricardo Wurmus
* gnu/packages/java.scm (openjdk24)[arguments]: Conditionally add configure flag to enable i686 port. Change-Id: Ib24d64d0dfb0e75ad6e1311a00cb8532d367b132
2026-04-28gnu: openjdk10: Conditionally disable C2 compiler when importing certificates.Ricardo Wurmus
* gnu/packages/java.scm (openjdk10)[arguments]: Conditionally add phase 'disable-C2-compiler on 32-bit x86. Change-Id: Id8a90deb686cb1354c53faac11b91af098e83f6e
2026-04-28gnu: ant-bootstrap: Add hack to build on i686.Ricardo Wurmus
* gnu/packages/java-bootstrap.scm (ant-bootstrap)[arguments]: Conditionally patch isFile checks. Change-Id: If09594e301dc4691f564e197499acc7d7af71706
2026-04-28gnu: r-seurat: Conditionally skip a test on 32-bit platforms.Ricardo Wurmus
* gnu/packages/cran.scm (r-seurat)[arguments]: On 32-bit platforms skip a test. Change-Id: I9c5eb3faed4bd3695fe81200447f201aa8081228
2026-04-28gnu: r-bpcells: Build with SSE2 for on x86 32-bit platforms.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-bpcells)[arguments]: Conditionally add phase 'require-sse2. Change-Id: I4927d9701e47dc34cc435d24c64a3043ad984f0d
2026-04-28gnu: r-bpcells: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-bpcells): Update to 0.3.1. [arguments]: Do not patch r/configure. Change-Id: Ia16297dc02bfecaf353de04452026df98ea5c826
2026-04-28gnu: r-actuar: Conditionally skip some tests on 32-bit platforms.Ricardo Wurmus
* gnu/packages/cran.scm (r-actuar)[arguments]: On 32-bit platforms skip some tests. Change-Id: Iad305e0819f919ace9ab9fe7d20357981e2a226a
2026-04-28gnu: r-expint: Conditionally skip test on 32-bit platforms.Ricardo Wurmus
* gnu/packages/cran.scm (r-expint)[arguments]: On 32-bit platforms skip one test. Change-Id: Ifa97d90cfcf65fbdb9c920515f32c383c61d1ae6
2026-04-28gnu: r-lme4: Conditionally skip test on 32-bit platforms.Ricardo Wurmus
This is really questionable. The test suite freezes in several places on i686-linux, and it's not clear why. It would be preferable to identify the cause and fix that for good, but perhaps we can revisit this once the state of R on i686-linux has improved. * gnu/packages/cran.scm (r-lme4)[arguments]: On 32-bit platforms skip several tests. Change-Id: I67e963ec29cb00f66c122817898f0c6db330307f
2026-04-28gnu: r-universalmotif: Conditionally skip test on 32-bit platforms.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-universalmotif) [arguments]: On 32-bit platforms skip one test. Change-Id: I66c046c20b0eefbaeb90c5fbf86233c175c096b4
2026-04-28gnu: r-ballgown: Adjust for testthat compatibility.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ballgown)[arguments]: Add phase 'testthat-compatibility. Change-Id: Id8d931ee79b55b82e977eb3822537f80b55108bf
2026-04-28gnu: r-s2: Conditionally skip tests on 32-bit platforms.Ricardo Wurmus
* gnu/packages/cran.scm (r-s2)[arguments]: On 32-bit platforms skip some tests. Change-Id: Ie1ce57ad4def078c58f33ceec21338b3fb1176f7
2026-04-28gnu: r-collapse: Conditionally skip tests on 32-bit platforms.Ricardo Wurmus
* gnu/packages/cran.scm (r-collapse)[arguments]: On 32-bit platforms skip some tests. Change-Id: Idd64fe930fba5b4599324ac0757bad7b0cba695f
2026-04-28gnu: r-cards: Conditionally skip one test.Ricardo Wurmus
* gnu/packages/cran.scm (r-cards)[arguments]: On 32-bit platforms skip one test. Change-Id: I7f0ade42f51290a862412dd3e280b6c42a81f654
2026-04-28gnu: r-ggplot2: Conditionally skip one test.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggplot2)[arguments]: On 32-bit platforms skip one test. Change-Id: Icc6d0d6046a18ed24e91e15294c49fb28b4cc12e
2026-04-28gnu: r-biocstyle: Do not build self-contained reports on 32-bit platforms.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocstyle)[arguments]: Conditionally add phase 'prevent-pandoc-segfault. Change-Id: I84ea57c44ceedb21e03050b4c48c9c05beedc7d7
2026-04-28gnu: proj-9.3: Fix build on 32-bit platforms.Ricardo Wurmus
* gnu/packages/geo.scm (proj-9.3)[arguments]: Conditionally add phase 'patch-tests to skip broken tests on 32-bit platforms. Change-Id: I953489a7ac6a6c577d898e677df77d4acf4499c8
2026-04-28gnu: proj: Fix build on 32-bit platforms.Ricardo Wurmus
* gnu/packages/geo.scm (proj)[arguments]: Conditionally add phase 'patch-tests to skip broken tests on 32-bit platforms. Change-Id: Idf6339181f9bad128b060c2178a07735abba1e0b
2026-04-28gnu: netcdf: Fix build on 32-bit platforms.Ricardo Wurmus
* gnu/packages/maths.scm (netcdf)[arguments]: Conditionally pass CFLAGS to ignore incompatible pointer types; conditionally update 'fix-tests phase to skip two broken tests on 32-bit platforms. Change-Id: Id5d149038275c152bbb30f0b155a2c2f7e05a76e
2026-04-28gnu: geos: Conditionally skip tests.Ricardo Wurmus
* gnu/packages/geo.scm (geos)[arguments]: Conditionally add phase 'disable-broken-tests on 32-bit platforms. Change-Id: I9367519716ef309cb6f33e7455d4472ff5293478
2026-04-28gnu: r-coro: Conditionally skip one test.Ricardo Wurmus
* gnu/packages/cran.scm (r-coro)[arguments]: On 32-bit platforms skip one test. Change-Id: I828ec4eae53df79ed476bd761905b78ae12e45ee
2026-04-28gnu: r-timechange: Conditionally skip one test.Ricardo Wurmus
* gnu/packages/cran.scm (r-timechange)[arguments]: On 32-bit platforms skip one test. Change-Id: Idb8298941382bc2447f780e17a125ed39fe889f5
2026-04-28gnu: r-bit64: Conditionally skip two tests.Ricardo Wurmus
* gnu/packages/cran.scm (r-bit64)[arguments]: On 32-bit platforms skip two tests. Change-Id: Iac69d9b9ab479e3756977b6669e4a9f2802233a0
2026-04-28gnu: r-data-table: Fix a test on 32 bit machines.Ricardo Wurmus
* gnu/packages/cran.scm (r-data-table)[arguments]: Conditionally add phase 'fix-bad-test. Change-Id: Iad9887debcb8a3e65e8495faae778266e42f1ead
2026-04-28gnu: r-bit64: Update home-page field.Ricardo Wurmus
The home page here was for the ff package, not bit64. * gnu/packages/cran.scm (r-bit64)[home-page]: Update to CRAN project page. Change-Id: Idcc1972bfe594185cdee29d8b4e4e0259941e784
2026-04-28gnu: r-accept: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-accept): Update to 1.0.2. [propagated-inputs]: Add r-hardhat, r-tibble, r-tidyselect, r-vctrs, and r-vetiver. [native-inputs]: Add r-spelling and r-testthat. Change-Id: I6b4782f8beb8e23f5e8987e1f00f34edec59c4b5
2026-04-28gnu: Add r-vetiver.Ricardo Wurmus
* gnu/packages/cran.scm (r-vetiver): New variable. Change-Id: Ia60cb1ca09daf342a2b8df826ed5306ea51a284f
2026-04-28gnu: Add r-rapidoc.Ricardo Wurmus
* gnu/packages/cran.scm (r-rapidoc): New variable. Change-Id: Ia43f969774fbaf1bdff69767d872ab113583c5db
2026-04-28gnu: Add r-pins.Ricardo Wurmus
* gnu/packages/cran.scm (r-pins): New variable. Change-Id: Ie69fde0b4252d7086a6dadab4645b7885b11f18f
2026-04-28gnu: Add r-bundle.Ricardo Wurmus
* gnu/packages/cran.scm (r-bundle): New variable. Change-Id: I7694f43e4aa4ebc421a0e946d5d3ddafd30aa3ef
2026-04-28gnu: r-bbotk: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-bbotk): Update to 1.10.0. [native-inputs]: Remove r-processx, r-redux, and r-rush. Change-Id: I3add7f5c00d752277dfae3199a9b37509869485c
2026-04-28gnu: Add r-embed.Ricardo Wurmus
* gnu/packages/cran.scm (r-embed): New variable. Change-Id: I33d35f8c58545f53c346cd656782c4ed526d17b4
2026-04-28gnu: r-yardstick: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-yardstick): Update to 1.4.0. [properties]: Record updater-ignored-native-inputs. [native-inputs]: Add r-epir, r-handtill2001, and r-orf. Change-Id: I27ce3c780b776ff985df7eb72473011cbd5e93d3
2026-04-28gnu: Add r-orf.Ricardo Wurmus
* gnu/packages/cran.scm (r-orf): New variable. Change-Id: I422f1fa4341b6835d2fd57057c1e1df49a0ec335
generated by cgit v1.3 (git 2.53.0) at 2026-07-13 15:22:24 +0000