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* gnu/packages/python-science.scm (python-distributed): Update to 2025.11.0.
[arguments] <tests?, test-flags>: Disable for now.
<phases>: Remove 'versioneer, 'fix-references, and 'pre-check.
[propagated-inputs]: Remove python-cryptography, python-dask-expr, and
python-setuptools; add python-jinja2, python-locket, and
python-packaging.
[native-inputs]: Remove python-flaky, python-importlib-metadata,
python-pytest, python-pytest-timeout, python-versioneer, and
python-wheel; add python-setuptools and python-setuptools-scm-next.
Change-Id: I1c368ee626d4bc5dc206df06431d164cd8df3428
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.7.2.
[arguments] <test-flags>: Limit parallel tests up to 8 thread; all tests
passed, don't skip any.
[native-inputs]: Add pkg-config.
Change-Id: I4ef534538ba83feb6d8e2bfb91f766e5dfd157e8
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-check.scm (python-nbval):
[arguments] <test-flags>: Skip some more tests to reduce closure size.
[propagated-inputs]: Remove python-six.
[native-inputs]: Remove python-pytest-cov, python-sympy, and
python-wheel.
Change-Id: I3e3e4378a837d62c553ff432aecf45d266589aee
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pydantic-2): Deprecate variable.
* gnu/packages/astronomy.scm (python-czml3, python-edps, python-hvpy):
[propagated-inputs]: Remove python-pydantic-2; add python-pydantic.
* gnu/packages/cybersecurity.scm (gallia):
[inputs]: Remove python-pydantic-2; add python-pydantic.
* gnu/packages/databases.scm (python-prisma)[propagated-inputs]:
Remove python-pydantic-2; add python-pydantic.
(python-tortoise-orm, aerich)[native-inputs]: Remove python-pydantic-2;
add python-pydantic.
* gnu/packages/django.scm (python-django-ninja)[propagated-inputs]:
Remove python-pydantic-2; add python-pydantic.
* gnu/packages/finance.scm (python-schwifty)[native-inputs]: Remove
python-pydantic-2; add python-pydantic.
* gnu/packages/games.scm (tuxemon)[propagated-inputs]: Remove
python-pydantic-2; add python-pydantic.
* gnu/packages/machine-learning.scm (python-spacy, python-thinc):
[propagated-inputs]: Remove python-pydantic-2; add python-pydantic.
* gnu/packages/maths.scm (python-libensemble)[propagated-inputs]: Remove
python-pydantic-2; add python-pydantic.
* gnu/packages/protobuf.scm (python-pure-protobuf)[native-inputs]:
Remove python-pydantic-2; add python-pydantic.
* gnu/packages/python-check.scm (python-inline-snapshot)[native-inputs]:
Remove python-pydantic-2; add python-pydantic.
* gnu/packages/python-science.scm (python-iminuit):[native-inputs]:
Remove python-pydantic-2; add python-pydantic.
(python-pandera, python-vaex-core)[propagated-inputs]: Remove
python-pydantic-2; add python-pydantic.
* gnu/packages/python-web.scm: (python-cloudpathlib, python-huggingface-hub):
[native-inputs]: Remove python-pydantic-2; add python-pydantic.
(python-aws-sam-translator, python-weasel, python-openai,
python-fastapi, python-fastapi-csrf-protect,
python-fastapi-pagination-minimal, python-fastapi-pagination):
[propagated-inputs]: Remove python-pydantic-2; add python-pydantic.
* gnu/packages/python-xyz.scm: (python-safety-schemas,
python-pytoolconfig, python-pydantic-cli, python-pydantic-settings,
python-confection, python-safety)[propagated-inputs]: Remove
python-pydantic-2; add python-pydantic.
(python-deepdiff, python-lief)[native-inputs]: Remove
python-pydantic-2; add python-pydantic.
Change-Id: I20842162ae8a6c0abd54e4ef1fc676f928541184
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pydantic-1): New variable.
Change-Id: Ifc4b64d7c1b34a083c35a0cad6be8da4d7e6c20b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pydantic): Update to 2.12.5.
[propagated-inputs]: Add python-annotated-types, python-pydantic-core, and
python-typing-inspection.
[native-inputs]: Remove python-setuptools and python-wheel; add tzdata-for-tests,
python-dirty-equals, python-faker, python-hatch-fancy-pypi-readme,
python-hatchling, python-jsonschema, python-pytest-benchmark,
python-pytest-examples, and python-pytest-run-parallel.
Change-Id: Ic844bac49a97736c1f2e2e01f7b732c0e2c36ea0
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pydantic-core): Update to
2.41.5. Enable tests.
[build-system]: Switch to pyproject-build-system.
[arguments] <modules>: Adjust for pyproject-build-system.
<phases>: Add 'prepare-cargo-build-system, and 'patch-pyproject.toml.
[native-inputs]: Add python-dirty-equals, python-pytest,
python-pytest-benchmark, python-pytest-mock, python-pytest-timeout,
python-typing-inspetion, python-tzdata, rust, and `(,rust "cargo")).
* gnu/packages/rust-crates.scm: (rust-cc-1.0.101, rust-jiter-0.11.1,
rust-lexical-parse-float-1.0.5, rust-lexical-parse-integer-1.0.5,
rust-lexical-util-1.0.6, rust-libc-0.2.155, rust-portable-atomic-1.6.0,
rust-proc-macro2-1.0.86, rust-pyo3-0.26.0,
rust-pyo3-build-config-0.26.0, rust-pyo3-ffi-0.26.0,
rust-pyo3-macros-0.26.0, rust-pyo3-macros-backend-0.26.0,
rust-quote-1.0.36, rust-rustversion-1.0.17, rust-speedate-0.17.0,
rust-syn-2.0.82): New variables.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs):
{python-pydantic-core}: Refresh the list.
Change-Id: Id861b1bdebad583c9d34a708ee229c61d7c2a799
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-check.scm (python-pytest-run-parallel): New variable.
Change-Id: I680f2dcc11e3457a3b05ebe65852a7cfd6c2df53
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-typing-inspection): New variable.
Change-Id: I1823a5683846b7c3620ed42c157bda437f7451f0
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-science.scm (python-dask): Update to 2025.11.0.
[arguments] <test-flags>: Do not max out availalbe thread, keep them on
4 for stability; rework skipped/ignored tests.
<phases>: Remove 'versioneer, and 'patch-pyproject.
[propagated-inputs]: Remove python-dask-expr; add python-lz4 and
python-pyarrow.
[native-inputs]: Remove python-importlib-metadata and python-versioneer;
add python-pytest-asyncio, python-pytest-mock, python-pytest-timeout,
python-setuptools-scm-next, and tzdata-for-tests.
Change-Id: I8234ad1923a2a228c9c240bb34c9e1c9dfcbbd55
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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This particular version is required for Dask update, I try to avoid
updating python-setuptools-scm to prevent triggering 8k+ rebuilds.
* gnu/packages/python-build.scm (python-setuptools-scm-next):
Undeprecate variable and set to 9.2.2 version.
Change-Id: I0e7f879bcf4f58ad9741ff4c7efb039c350f0014
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-compression.scm (python-blosc):
[propagated-inputs]: Remove python-scikit-build.
[native-inputs]: Remove python-numpy; add python-numpy-1 and
python-scikit-build.
Change-Id: I30da797eea3b92909ba707af41cde90062d974bf
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-h5py): Update to 3.15.1.
[arguments] <test-flags>: Skip test recruiting the build with MPI
support.
<phases>: Remove 'relax-gcc-14-strictness; do not delete/implement custom
'check, use default.
[propagated-inputs]: Remove python-six.
[native-inputs]: Remove python-ipython, python-pytest-mpi, and
python-wheel.
Change-Id: Iee3bdaa9f3950404791e770ee600da1650842496
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/check.scm (python-pytest-regressions): Move from here ...
* gnu/packages/python-check.scm: ... to here.
Change-Id: I829667aa3cadd8a762194e1948c88b72e6a4eeda
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/check.scm (python-pytest-regressions): Update to 2.8.3.
[arguments] <test-flags>: Remove requirements of expensive inputs.
[native-inputs]: Remove python-numpy, python-pandas, and python-pytest; add
python-pytest-bootstrap.
Change-Id: I482521782c8cd21c8a86ed69c11a8efa538326e4
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-science.scm (python-scipy): Update to 1.16.3.
[arguments] <test-flags>: Use Pytest directly, as seen in project's
GitHub Actions.
<phases>: Remove 'apply-i686-patch; add 'relax-requirements,
'hide-gfortran; rework custom 'check to run Pytest directly.
[native-inputs]: Remove gcc, python-cython-0; add python-cython, and
python-hypothesis.
[inputs]: Remove pybind11-2.10; add boost, pybind11, qhull, and xsimd.
* gnu/packages/patches/python-scipy-i686.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Deregister patch.
Change-Id: Ibc38577b9b0c915e54ca3b3096727c9c2f82e19c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-msgpack): Update to 1.1.2.
Change-Id: Ic69b1b9f8fc9d6da32c00584e86de42af167ec0c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-science.scm (python-pandas-2): Update to 2.3.3 and
rename to python-pandas.
[arguments] <test-flags>: Rework skipped tests.
<phases>: Remove 'pre-check, and 'patch-which; use custom 'check.
[inputs]: Remove which, it's implemanted with Python's `shutil.which()'.
[propagated-inputs]: Remove python-jinja2, python-matplotlib,
python-openpyxl, python-xlrd, and python-xlsxwriter.
[native-inputs]: Remove python-beautifulsoup4, python-cython,
python-html5lib, python-matplotlib, python-openpyxl,
python-pytest-localserver, and python-pytest-mock; add meson and
tzdata-for-tests.
(python-pandas-2): Deprecate variable in favor of python-pandas.
Change-Id: Ib4aefbbc33f46f793430ac396cbe5e6c4107ec2f
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.10.8.
[source]: Fetch from git and delete patches.
[#:configure-flags]: New argument.
[#:test-flags]: Consolidate all test arguments here, adding "-n" and
"--pyargs". Update skipped tests regexps.
[#:phases] {fix-and-disable-failing-tests}: Rename to...
{patch-commands}: ... this, and streamline phase.
{patch-dlopen}: Update patched file name.
{configure-environment}: Streamline.
{chdir}: New phase.
[native-inputs]: Add meson-python.
* gnu/packages/patches/python-matplotlib-fix-legend-loc-best-test.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
Change-Id: Ib002aae96559efa625d2059c783536f77f4170a5
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-web.scm (python-httptools): Update to 0.7.1.
Change-Id: Iae65ddeff91abec3029403998469ae53547f295b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-numpy-2): Deprecated in favor of
python-numpy.
(python-omero-py, python-numexpr) [propagated-inputs]: Remove
python-numpy-2; add python-numpy.
* gnu/packages/algebra.scm (kissfft)
[native-inputs]: Remove python-numpy-2; add python-numpy.
* gnu/packages/image.scm (vigra):
[inputs]: Remove python-numpy-2; add python-numpy.
* gnu/packages/machine-learning.scm (python-spacy):
[propagated-inputs]: Remove python-numpy-2; add python-numpy.
* gnu/packages/machine-learning.scm (python-thinc):
[propagated-inputs]: Remove python-numpy-2; add python-numpy.
* gnu/packages/maths.scm (python-blis):
[native-inputs]: Remove python-numpy-2; add python-numpy.
Change-Id: Ie6041de76a227246ec63b0efa04d293dcc22b40b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-numpy): Move definition from
python-numpy-2 here.
(python-numpy-1): New variable, inherit from python-numpy.
Change-Id: I78bf7cae09b5bea59b536fe4ba14649a3398539c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-cython-next): New variable.
Change-Id: I9bc2e1881edb4113f5919d39a6481067da986045
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-cython): Update to 3.1.7.
Change-Id: I0771e680017223c0ef0fee01fc30edda0e274ebb
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-build.scm (python-setuptools-79): New variable.
Change-Id: I4a20b5e1fc9a40749b56d193b50b823ba75cba86
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/engineering.scm (pythonscad): Reindent.
Change-Id: If1244fb065e8dad009ad61af1570c398c5242442
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/engineering.scm (pythonscad): Update to 0.8.4.
[source]: Use version tag instead of commit hash.
[arguments]: Remove OPENSCAD_COMMIT configure flag. Fix CMakeLists.txt
substitution to use OpenSCADLibInternal instead of OpenSCAD.
Change-Id: I08b0ac1488fa958912a77292b8bcef15bde653e1
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/video.scm (mkvtoolnix): Update to 97.0
[inputs]: Replace boost-1.83 with boost.
Change-Id: I5dd142e9ef2124c52d1b45d3e8d642eaf6c472ac
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/gps.scm (gpsd)[inputs]: Replace qtbase-5 by qtbase.
[arguments]<#:scons-flags>: Drop "qt_versioned=5".
Change-Id: I2a13f2079975e89ae264e2269afbf2c4d4a07551
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/gps.scm (gpsd): Update to 3.27.3.
Change-Id: Ic88b76a2e3ab0d13eb20016d3d8e0ef24bad11da
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/kde-education.scm (marble-qt): Deprecate and rename to...
(marble): ...this.
* gnu/packages/kde-graphics.scm (digikam)[inputs]: Adapt.
Change-Id: Ib521c4a2d058b8b6b68c3e1359c73485877c25ea
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/gnome.scm (libgit2-glib): Update to 1.2.1.
Change-Id: I8d050854f4a00a6c19bdff83d54e25c3ac582bc0
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/sagemath.scm (sage)[inputs]: Add python-cvxopt,
python-lrcalc, python-mpmath, python-networkx, python-primecountpy,
python-scipy, python-sympy.
Change-Id: I6531b2c4e6ac14b1eed838bc51035ce84621a349
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/disk.scm (ddrescue): Update to 1.30.
Change-Id: I9fb74ed0dce743accb94ff9a23c4ea64ff55f631
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/wget.scm (wget2): Update to 2.2.1.
Change-Id: I3abdf8a7425e46c8f2240b2e8f803a06a88b9e40
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/patches/bmake-run-check-separately.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/build-tools.scm (bmake)[source]: Use it.
[arguments/<#:tests, #:test-target>: Set to enable tests.
Change-Id: I7e270e1c74b475813cb9c623f2b8a37e1f09a0b9
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/build-tools.scm (bmake): Update to 20251111.
[native-inputs]: Add bc.
[arguments]<#:make-flags>: Skip tests via BROKEN_TESTS.
<#:configure-flags>: Add a flag to use sh as defshell.
<#:phases>: Add 'fix-shell-detection phase and switch to sh as defshell.
Change-Id: Ie469a5a8e2f868aecb7bb620a5127f710c81ae86
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/terminals.scm (asciinema): Update to 3.0.1.
[source]: Change to url-fetch.
[build-system]: Change to cargo-build-system.
[native-inputs]: Remove python-pytest, python-setuptools and python-wheel.
Add python-minimal.
[inputs]: Change to cargo-inputs.
[build-phases]: Remove unnecessary phase.
* gnu/packages/rust-crates.scm (asciinema): Add dependencies.
Change-Id: Ic4197a6a03aad5b309d9b5b6bbc39c094350d86f
Signed-off-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/books.scm (xiphos)[native-inputs]: Replace atk
by at-spi2-core.
Change-Id: Ie945affc7fd71fedb882872206ad28f399f947fa
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/texlive.scm (%texlive-date, %texlive-year,
texlive-extra-src, texlive-texmf-src, texlivebin, texlivetexmf): Delete
variables.
(texlive): Redefine as texlive-scheme-full.
* gnu/packages/books.scm: Remove module inclusion.
* doc/guix.texi: Remove documentation for monolithic texlive.
Change-Id: I23837ca29cbbc080833be122972dcfe31c0fd1bb
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/libunistring.scm (libunistring)[arguments]:
When building for MinGW, add phase `patch-tests/nanosleep.c'.
Change-Id: Ia76c342f2bbe7873367b5e59168f7180b845f4c3
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/aidc.scm (zint) [build-system]: Switch to cmake-build-system.
[#:qtbase]: Delete argument.
[#:configure-flags]: Remove "-DZINT_QT6=ON".
[native-inputs]: Remove qttools.
[inputs]: Remove qtsvg.
* gnu/packages/aidc.scm (zint-with-qt): New variable.
Fixes: #4953
Change-Id: Ib71783ffce585b01f4d72e618fba0bf22167c5a0
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/aidc.scm (zint): Update to 2.16.0.
Change-Id: I5f1173d2afe49e3f8e566ca2cdb8091c52f9c873
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/package-management.scm (guix-modules): Update to 0.3.0.
Change-Id: Idb0fe7d46f0832bd01c17bc2ae4edcdab35925f7
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/patches/hurd-streamio-select.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/hurd.scm (hurd): Add patch.
Change-Id: I608380fbeab50ebc2e631488488aabf63e6483b4
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/patches/gnumach-kmsg-overflow.patch: New patch
* gnu/local.mk (dist_path_DATA): Register patch.
* gnu/packages/hurd.scm (gnumach): Add the patch.
Change-Id: Ibc75e9374426fe4aacbc94c1265d7dbb77386afa
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/ssh.scm (clustershell): Update to 1.9.3.
[native-inputs]: Remove python-wheel.
Change-Id: I027d5a3c2a6734e18442d0cd6f7444828b895a0d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/ssh.scm (webssh): Update to 1.6.3.
[native-inputs]: Remove python-wheel.
Change-Id: Ie26495f775d8b77f4a458917b8537beb5b060459
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/ssh.scm (webssh)[arguments]: Disable #:tests?.
Change-Id: I00b802face9cf7b46cf07d077a4682ff5c202d4a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/engineering.scm (python-platypush): Update to 1.3.14.
[arguments] <phases>: Remove 'relax-requirements.
Closes guix/guix#4974
Change-Id: I1bba9ad4c1e1aedd26bf792140b0a3055fade016
Signed-off-by: Cayetano Santos <csantosb@inventati.org>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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