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* gnu/packages/qt.scm (qtwebengine-5)[source]: Add a patch to adjust
python-six. Add to the snippet to work around 'imp' being removed from
python@3.12.
* gnu/packages/patches/qtwebengine5-python312-six-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
Fixes: guix/guix#8576
Change-Id: Ib202d3eb50764ed46c57610e9abdbb4db118362a
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* gnu/packages/audio.scm (aubio)[source]: Add patch.
* gnu/packages/patches/aubio-waflib-python312-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
Change-Id: Id7bbd06f8cd162ea6ed5ac7c73bbae74a3075cc7
Merges: https://codeberg.org/guix/guix/pulls/8534
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/patches/ceph-fix-cmake.patch: Remove patch.
* gnu/local.mk: De-register patch.
* gnu/packages/storage.scm (ceph): Update to 21.0.0.
[arguments]{#:configure-flags}: Refresh them.
{#:phases}: Refresh phsae 'patch-source, 'post-install.
[native-inputs]: Add catch2-3.8, patchelf, pkg-config,
python-setuptools.
[inputs]: Replace boost-1.88 by boost.
Change-Id: I5de6bca25a36b9fe24d63cadc7c3229f5fadf063
Reviewed-by: Hugo Buddelmeijer <hugo@buddelmeijer.nl>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/patches/python-lsp-server-python-3.13-compatibility.patch:
Add patch, taken from upstream pull request 692.
* gnu/local.mk: Record patch.
* gnu/packages/python-xyz.scm (python-lsp-server)[origin]<patches>:
Add patch.
Change-Id: Ia310b621afbf6a30666dcd4ab44365b987afcafa
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/sssd.scm (sssd): Update to 2.13.0.
[arguments]<#:phases>: Use search-input-file rather than
this-package-input when possible. In phase 'disable-failing-tests,
add an additional test that requires root user access.
[inputs]: Add libcap.
[native-inputs]: Add python-setuptools.
* gnu/packages/patches/sssd-system-directories.patch: Refresh it.
Change-Id: I69ec820703e3c6681ed4676317071ccd07f565e0
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/patches/tuir-python-3.12-support.patch: Add patch.
* gnu/local.mk: Record patch.
* gnu/packages/syndication.scm (tuir)
[source]<origin>: Add patch.
[arguments, inputs]: Improve style.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/patches/python-zeroc-ice-3.6.5-python-3.12-support.patch:
Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python-xyz.scm (python-zeroc-ice-3.6): Use it.
Merges: https://codeberg.org/guix/guix/pulls/8389
Change-Id: I73d3b981414474d880a82413dcff2fc11ef04d53
Signed-off-by: Nguyễn Gia Phong <cnx@loang.net>
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* gnu/packages/patches/python-ubjson-recursion-test.patch: New file.
* gnu/local.mk: Register it
* gnu/packages/web.scm (python-py-ubjson)[source]<patches>: Use it.
[arguments]<#:phases>: Drop them. <#:test-backend>: Set to unittest.
[native-inputs]: Drop python-coverage, lcov. Relocate field.
Reviewed-by: Hugo Buddelmeijer <hugo@buddelmeijer.nl>
Change-Id: I0090eb39caa431775f8606740d2795eebe5bbc3a
Signed-off-by: Nguyễn Gia Phong <cnx@loang.net>
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* gnu/packages/patches/python-beangulp-click-8.2-compat.patch: New file.
* gnu/packages/finance.scm (python-beangulp)[source]<patches>: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
Change-Id: I4f29e865f6df078b667dfd2129023b9e35c2f9b5
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* gnu/packages/patches/python-zipfile2-python-3.12-support.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python-compression.scm
(python-zipfile2)[source]<patches>: Use it.
Change-Id: I0e85c198831a9c039889ddc3e4519dc304dc3d5e
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* gnu/packages/maths.scm (coda)
[source]: Switch to git-fetch. Update to 2.25.6.
<patches>: Drop patch.
<snippet>: Improve style and patch with a substitute* instead, refresh
it for pcre2.
[native-inputs]: Drop input labels. Add autoconf, automake, bison,
flex, libtool.
[inputs]: Replace pcre by pcre2.
* gnu/packages/patches/code-use-system-libs.patch: Drop patch.
* gnu/local.mk: Likewise.
Change-Id: If8c33f94b421c93724cabf8c45815a5cb19fb046
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/patches/thefuck-remove-broken-tests.patch: Remove patch.
* gnu/packages/admin.scm (thefuck): Upgrade to 3.32-0.c7e7e1d.
[source]: Don't use patch.
[arguments]<#:test-flags>: Ignore broken tests.
* gnu/local.mk (dist_patch_DATA): Unregister patch.
Merges: https://codeberg.org/guix/guix/pulls/7617
Change-Id: I0bd94d7072412f73d4733af62e4577a2500db3a0
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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Followup to 017903d435f987c50c085bf415a07a551684412b.
* gnu/packages/python-science.scm (python-scikit-image): Fix build.
[source]: Add patch.
* gnu/packages/patchen/python-scikit-image-fix-python-pillow.patch: Add.
* gnu/local.mk (dist_patch_DATA): Register patch.
Merges: https://codeberg.org/guix/guix/pulls/7261
Change-Id: I7eee2e1f397f1f1ce0757f588da921687296ad41
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/patches/gtk4-demo-reproducible.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gtk.scm (gtk) [source]: Apply it.
Change-Id: I03ef58f324a84151a681988a18aa1ab986aeba79
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* gnu/packages/gtk.scm (gtk): Update to 4.22.1.
[patches]: Add gtk-needs-udmabuf.patch.
[#:phases] {pre-check}: Adjust arguments of Xvfb.
[native-inputs]: Add glibc-utf8-locales.
* gnu/packages/patches/gtk-needs-udmabuf.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
Change-Id: If9043cb55a60f4ec703515b61796b38fb4959f0b
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* gnu/packages/patches/python-versioneer-guix-support.patch:
Extract version from the environment variable
instead of the parent directory name.
Change-Id: Ide050eeb8fbb82c29805fce74d891d62b7e707cb
Reviewed-by: Nicolas Graves <ngraves@ngraves.fr>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/rust-apps.scm (maturin): Update to 1.11.5.
[arguments]<#:cargo-test-flags>: Add skip for test_pep639 and
metadata_hello_world_pep639, renamed 'test' namespace to 'tests'.
[inputs]: Add zstd:libs.
[native-inputs]: Add pkg-config.
* gnu/packages/patches/maturin-no-cross-compile.patch: Update to 1.11.5.
* gnu/packages/rust-crates.scm (maturin): Update dependencies.
Change-Id: Ic479aa238b60331402749ff24fbf2a5e2b4c280c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/patches/dblatex-importlib.patch: New file.
* gnu/packages/docbook.scm (dblatex)[origin]<patches>: Record patch.
* gnu/local.mk: Record patch.
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* gnu/packages/patches/amd-smi-newer-libdrm.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/rocm.scm (amd-smi)[source]: Use it.
Fixes: guix/guix#8058
Change-Id: I3348b888ab297647c4fdb2e4a38707a92994af22
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #8599
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* gnu/packages/patches/fdroidcl-fix-tests.patch: New file.
* gnu/local.mk: Register new patch.
* gnu/packages/android.scm (fdroidcl): Update to 0.8.1.
[source]: Add the patch.
[arguments]<#:tests>: Enable tests.
[inputs]: Add go-github-com-pelletier-go-toml-v2 and
go-github-com-rogpeppe-go-internal.
Merges: guix/guix!7843
Change-Id: I0a891a7f36890c41a777eabd724bd9afccfda354
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/patches/linux-shmem-hurd-xattr.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (linux-libre-7.0-source): Use it.
Change-Id: Iedb5d891a7f7638a1644a036e0304ca856d7e4a8
Signed-off-by: Vagrant Cascadian <vagrant@debian.org>
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* gnu/packages/terminals.scm (kitty): Update to 0.46.2. Improve style by
applying G-Expressions.
[build-system]: Switch to go-build-system.
[phases] 'setup-fonts, 'build-kitty, 'run-python-tests, 'cleanup, 'install
[output]: Add "kitten" output.
[native-inputs]: Remove mesa, libxcursor, libxi, libxinerama,
libxkbcommon, libxrandr, wayland-protocols-1.42; Add bash, fish,
font-nerd-symbols, go-github-com-alecthomas-chroma-v2,
go-github-com-altree-bigfloat, go-github-com-bmatcuk-doublestar-v4,
go-github-com-dlclark-regexp2, go-github-com-google-go-cmp,
go-github-com-google-uuid, go-github-com-hako-durafmt,
go-github-com-klauspost-compress, go-github-com-kovidgoyal-dbus,
go-github-com-kovidgoyal-exiffix, go-github-com-kovidgoyal-go-parallel,
go-github-com-kovidgoyal-go-shm, go-github-com-kovidgoyal-imaging,
go-github-com-nwaples-rardecode-v2, go-github-com-rwcarlsen-goexif,
go-github-com-seancfoley-bintree, go-github-com-seancfoley-ipaddress-go,
go-github-com-shirou-gopsutil-v4, go-github-com-ulikunitz-xz,
go-github-com-zeebo-xxh3, go-golang-org-x-exp, go-golang-org-x-image,
go-golang-org-x-sys, go-golang-org-x-text, go-howett-net-plist,
python-pillow, python-sphinx, python-sphinx-copybutton,
python-sphinx-inline-tabs, python-sphinxext-opengraph,
wayland-protocols, zsh.
[inputs]: Add cairo, librsync, libx11 libxcursor, libxext, libxi,
libxinerama, libxkbcommon, libxrandr, mesa, ncurses, openssl, simde,
startup-notification, xxhash
Removed freetype, python-pygments
* gnu/packages/patches/kitty-fix-wayland-protocols.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Deregister patch.
Change-Id: I065aadd348e9995f4c93c844d277d553460157d8
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/finance.scm (monero): Update to 0.18.5.0.
[source]<patches>: Remove monero-use-system-miniupnpc.patch.
[source]<snippet>: Remove "external/miniupnp".
[inputs]: Remove miniupnpc-2.1.
* gnu/packages/patches/monero-use-system-miniupnpc.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Unregister monero-use-system-miniupnpc.patch.
Change-Id: I0bc7ac9694a03181ef692e222736fab11d0b3648
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
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Upstream declared it abandoned since 2022-11-17.
* gnu/packages/zwave.scm: Delete file.
(open-zwave): Delete variable.
* gnu/packages/patches/open-zwave-hidapi.patch: Delete file.
* gnu/local.mk: Remove references to the files above.
* po/packages/POTFILES.in: Remove references to the files above.
Fixes: guix/guix#7699
Change-Id: I37242e5958db1abd00259a8c956310f6a1e10f7c
Signed-off-by: Andreas Enge <andreas@enge.fr>
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* gnu/packages/esolangs.scm (shakespeare-spl): Delete variable.
* gnu/packages/patches/shakespeare-spl-fix-grammar.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Unregister file.
Fixes: guix/guix#7637
Change-Id: I0fa9f0788a030fd0caaa58d9bb2b06b190056151
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* gnu/packages/patches/ganeti-openssh-test-fix.patch: Delete file.
* gnu/packages/patches/ganeti-procps-compat.patch: Likewise.
* gnu/packages/patches/ganeti-pyyaml-compat.patch: Likewise.
* gnu/packages/patches/ganeti-relax-dependencies.patch: Likewise
* gnu/packages/patches/ganeti-reorder-arbitrary-definitions.patch:
Likewise.
* gnu/packages/patches/ganeti-sphinx-import.patch: Likewise.
* gnu/packages/patches/ganeti-template-haskell-2.17.patch: Likewise.
* gnu/packages/patches/ganeti-template-haskell-2.18.patch: Likewise.
* gnu/local.mk: Unregister them.
* gnu/packages/virtualization.scm (ganeti): Update to 3.1.0.
[source]<patches>: Drop the above patches.
[arguments]<#:imported-modules, #:modules>:
Drop haskell build-system modules.
<#:phases>{configure-haskell, do-not-use-GHC_PACKAGE_PATH}:
Delete phases.
{patch-absolute-file-names, adjust-tests, pre-check}
{install-bash-completions}. Refresh file names.
Use srfi-26's cut when adequate.
[native-inputs]: Drop input labels.
[inputs]: Add ghc-case-insensitive, ghc-monad-control, ghc-parallel,
ghc-random, ghc-transformers-base. Remove ghc-psqueue.
Merges: https://codeberg.org/guix/guix/pulls/8330
Signed-off-by: Nguyễn Gia Phong <cnx@loang.net>
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* gnu/packages/maths.scm (cvc5): Update to 1.3.4.
[source]<patches>: Remove patches.
* gnu/local.mk (dist_patch_DATA): Deregister removed patches.
* gnu/packages/patches/cvc5-reproducible-build.patch: Delete file.
* gnu/packages/patches/cvc5-symfpu-compatibility.patch: Delete file.
Change-Id: I83d05653587fedcb21b78dfbae2026960fe07f55
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* gnu/packages/music.scm (ctune): Update to 1.3.10.
[source]<patches>: Remove patch.
[arguments]: Switch to gexp.
<#:configure-flags>: Add "-DNO_NCURSESW=ON".
* gnu/local.mk (dist_patch_DATA): Deregister the removed patch.
Change-Id: Idc92db9021647844b76c84a8fcb7ef93fcafe24f
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Fix performance regression introduced by
10ea4f874e5f1ff57df840a60195a073b1b0b898, which added
ungoogled-chromium-custom-compiler.patch. This patch was taken from gentoo and
fixes some build failures when using our system toolchain. However it also
removes build optimizations which we rely on, so here we adjust it to our needs.
* gnu/packages/patches/ungoogled-chromium-custom-compiler.patch: Don't patch
the optimized configuration away.
* gnu/packages/chromium.scm (%preserved-third-party-files): Remove
base/third_party/nspr, buildtools/third_party/libc++,
buildtools/third_party/libc++abi, third_party/libc++,
third_party/llvm-libc and third_party/llvm-libc/src/shared, we don't need them.
[arguments] <#:phases> {install}: Include libvulkan.so.1 to installed libs.
Add a semicolon to @@uri_scheme substitution to avoid future surprises if this
ever moves from being the last item in list.
Fixes: guix/guix#7738
Change-Id: I331908ebf0838b7fc2d567e9c429d861e882470d
Signed-off-by: Andreas Enge <andreas@enge.fr>
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* gnu/packages/patches/quickjs-ng-64-bits-precision-on-i686.patch:
Remove file.
* gnu/packages/patches/quickjs-ng-fix-atomics.pause-on-32-bit.patch:
Remove file.
* gnu/local.mk: Deregister them.
* gnu/packages/javascript.scm (quickjs-ng): Update to 0.14.0.
[source]: Remove deregistered patch files.
[#:phases]: Add 'skip-failing-tests.
(test262-source): Update to the latest commit pinned by quickjs-ng.
Change-Id: Ia19f54fef1851e82bae1a2f4bf79e48cc507fd6d
Merges: d9076445c0a2f5b0fb60e38269efe45ccbba6584
Signed-off-by: Nguyễn Gia Phong <cnx@loang.net>
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* gnu/packages/patches/php-01-fix-expired-certificate.patch: New file.
* gnu/packages/patches/php-02-fix-sni-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register new patches.
* gnu/packages/php.scm (php-8.5, php-8.4)
[source]: Use the patches.
[arguments]<#:phases>: Remove regenerate-ssl-certs phase.
Fixes: guix/guix#8040
Change-Id: I4194a227a40ab95aad1ffae811f2d0c5b59cb650
Signed-off-by: Andreas Enge <andreas@enge.fr>
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* gnu/packages/netbeans.scm (netbeans): New variable.
* gnu/packages/patches/netbeans-25-nativeexecution-paths.patch: New file.
* gnu/packages/patches/netbeans-25-source-only-build.patch: New file.
* gnu/packages/patches/netbeans-25-terminal-no-login-shell.patch: New file.
* gnu/packages/patches/netbeans-25-wayland-font-rendering.patch: New file.
* gnu/local.mk (GNU_SYSTEM_MODULELS): Add reference to them.
(dist_patch_DATA): Add reference to them.
Change-Id: I184398afeeb4f2bcdfbaf8f2e849afe665c7c6b7
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* gnu/packages/patches/jbr-25-wayland-drag-icon.patch: New file.
* gnu/packages/patches/jbr-25-wayland-intra-jvm-dnd.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add references to them.
* gnu/packages/java.scm (jbr25): New variable.
Change-Id: I3358c4be096f887f2eca451396ddd44f6bb6bfa6
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* gnu/packages/patches/java-apache-xml-commons-resolver-1.2-netbeans.patch:
New file.
* gnu/local.mk (patch_dist_DATA): Add reference to it.
* gnu/packages/netbeans.scm (java-apache-xml-commons-resolver-netbeans-1.2):
New variable.
Change-Id: I606c0fa70aec1d455f5d00370b329350ce5591d3
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* gnu/packages/patches/java-simplevalidation-1.14.1.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add reference to it.
* gnu/packages/java.scm (java-simplevalidation-1.14.1): New variable.
Change-Id: I2e69ee8c5f6dfa1f0beba3d01c82ddae51de3c5f
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* gnu/packages/patches/java-jtidy-remove-xerces-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add reference to it.
* gnu/packages/java.scm (java-jtidy): New variable.
Change-Id: Ic127db3f8b4358d54ce37ea86545f244f291e297
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Contains fixes for:
CVE-2026-7320: Information disclosure due to incorrect boundary
conditions in the Audio/Video component
CVE-2026-7322: Memory safety bugs fixed in Firefox ESR 115.35.1,
Firefox ESR 140.10.1 and Firefox 150.0.1
CVE-2026-7323: Memory safety bugs fixed in Firefox ESR 140.10.1 and
Firefox 150.0.1
CVE-2026-7324: Memory safety bugs fixed in Firefox 150.0.1
* gnu/packages/librewolf.scm (librewolf): Update to 150.0.1-1.
* gnu/packages/patches/librewolf-150.0-encoding_rs-rust-fix.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove
librewolf-150.0-encoding_rs-rust-fix.patch.
Change-Id: Ibf081e87d9183c5f04330389da87639ed80a7f77
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* gnu/packages/patches/emacs-agent-shell-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Record it.
* gnu/packages/emacs-xyz (emacs-agent-shell)[source]: Register it.
[arguments]: Add #:test command.
[native-inputs]: Add emacs-ert-runner.
Merges guix/guix!8197
Change-Id: If451a42bf65e534b4dbdce025a47c31ad548cf1a
Signed-off-by: Cayetano Santos <csantosb@inventati.org>
Modified-by: Cayetano Santos <csantosb@inventati.org>
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* gnu/packages/emacs-build.scm (emacs-buttercup): Update to 1.40.
[source]: Remove patch.
*
gnu/packages/patches/emacs-buttercup-1.38-native-comp-spy-on-trampoline-scope.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Propagate deletion.
Change-Id: I569ff6a6c336d4c177c060da83e8ff72a38d3698
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* gnu/packages/astronomy.scm (cianna): Update to
c9aa934a931ed77663997f0f20172ee7f63b068a commit.
[source] <patches>: Add patch fixing missing CUDA error during runtime.
[build-system]: Switch to cmake-build-system.
[phases]{configure, check, build}: Keep phases.
{fix-paths}: Remove phase.
[native-inputs]: Remove python-wrapper, python-numpy, python-setuptools.
* gnu/packages/patches/cianna-remove-error-for-missing-cuda.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch
Change-Id: I953ed80843ce9939b46435d8e9b8a7f2966774d4
Reviewed-by: Hugo Buddelmeijer <hugo@buddelmeijer.nl>
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* gnu/packages/mail.scm (stalwart): New variable.
* gnu/packages/patches/rust-librocksdb-sys-unbundled-sources.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs): Add stalwart.
Change-Id: Ie2a39712567d590ce3e7a73ed7cac0893c56dfd2
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/patches/orca-fix-gst-init-check-call.patch: New file.
* gnu/local.mk (dist_patch_DATA): Reference it here.
* gnu/packages/gnome.scm (orca): Use it here.
[#:phases]<qualify-program>: Adapt to upstream quote style change.
[inputs]: Add python-dbus.
Change-Id: I585d610901c7c3d488840c00f0a1d03942eebe01
Signed-off-by: Noé Lopez <noelopez@free.fr>
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* packages/patches/cvc5-symfpu-compatibility.patch: New patch.
* gnu/local.mk (dist_patch_DATA) Register it.
* gnu/packages/maths.scm (cvc5)[patches]: Use it.
Change-Id: Ie8b9b24efed45365a1e974396d6e3d9c5367bf1e
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* gnu/packages/patches/r-mscoreutils-0001-fix-non-API-call-to-R-SETLENGTH-by-using-lengthgets.patch: New file.
* gnu/local.mk (dist_patch_DATA): Record it.
* gnu/packages/bioconductor.scm (r-mscoreutils)[source]: Register patch.
Change-Id: If288fed9c85d7a46d1938e7699e2a9bc57447a03
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* gnu/packages/patches/r-shortread-0001-ShortRead-1.69.3-Get-rid-of-non-API-calls-to-R.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Record it.
* gnu/packages/bioconductor.scm (r-shortread)[source]: Register patch.
Change-Id: I9fd85076db6a86b25f4389d3226e0fde8a38a3b5
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* gnu/packages/patches/r-h5mread-0001-h5mread-1.3.2-Get-rid-of-non-API-calls-to-R.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Record it.
* gnu/packages/bioconductor.scm (r-h5mread)[source]: Register patch.
Change-Id: Iecbf0eb41b554169b36c00b74072b1fca7a31943
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* gnu/packages/patches/r-rsamtools-r-4.6.0-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Record it.
* gnu/packages/bioconductor.scm (r-rsamtools)[source]: Register patch.
Change-Id: I0c1eafe3c440f998d309174e4292061dbaf3eb34
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* gnu/packages/patches/r-sparsearray-r-4.6.0-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Record it.
* gnu/packages/bioconductor.scm (r-sparsearray)[source]: Register patch.
Change-Id: I569f7150d91393d8c7c9981ebe3db77c0cfa5356
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* gnu/packages/patches/r-snpstats-0001-fixed-non-API-except-for-IS_S4_OBJECT.patch,
gnu/packages/patches/r-snpstats-0002-fixed-IS_S4_OBJECT.patch: New files.
* gnu/local.mk (dist_patch_DATA): Record them.
* gnu/packages/bioconductor.scm (r-snpstats)[source]: Register patches.
Change-Id: I911f5833199448a16a23f9e715903a8427b08233
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* gnu/packages/patches/r-biostrings-r4.6.0-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Record it.
* gnu/packages/bioconductor.scm (r-biostrings)[source]: Register patch.
Change-Id: Id0ba9e4340245c456e25e631ca372c1a6edb2bba
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