| Age | Commit message (Collapse) | Author |
|
* gnu/packages/maths.scm (python-libensemble): Update to 1.6.0.
[phases]{relax-psutil}: Remove phase.
{check}: Rework skipped removed tests; tests are run with Python script,
adjust steps accordingly.
[propagated-inputs]: Add python-gest-api.
[native-inputs]: Remove ncurses and python-wheel; add openmpi,
python-pytest-cov, and python-rich.
Change-Id: I38d5c74b4fd5efcd3ed6739854d92196bd8dbc35
|
|
* gnu/packages/maths.scm (coda)
[source]: Switch to git-fetch. Update to 2.25.6.
<patches>: Drop patch.
<snippet>: Improve style and patch with a substitute* instead, refresh
it for pcre2.
[native-inputs]: Drop input labels. Add autoconf, automake, bison,
flex, libtool.
[inputs]: Replace pcre by pcre2.
* gnu/packages/patches/code-use-system-libs.patch: Drop patch.
* gnu/local.mk: Likewise.
Change-Id: If8c33f94b421c93724cabf8c45815a5cb19fb046
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
|
|
After this commit, when both modules are imported:
- if pyproject is imported before, the warning is 'pypi-uri' is
deprecated, use '(@ (guix build-system pyproject) pypi-uri)' instead
- if python is imported before, the warning is `pypi-uri' imported from
both (guix build-system python) and (guix build-system pyproject)
This seems convenient enough to warn for deprecation in the short term,
while avoiding any breaking changes.
* guix/build-system/pyproject.scm (pypi-uri): Move the procedure from
(guix build-system python) here.
* guix/build-system/python (pypi-uri): Drop definition, import it
from (guix build-system pyproject) and deprecate it.
* gnu/packages/openldap.scm: Reorder modules to get the right warning.
* gnu/packages/pypy.scm: Likewise.
* gnu/packages/*.scm : Drop module (guix build-system python).
* tests/import/pypi.scm: Likewise.
Merges: https://codeberg.org/guix/guix/pulls/7448
Change-Id: Ib42f53bc545052eb7918a25afe9db6d5fc2cb834
Reviewed-by: Nguyễn Gia Phong <cnx@loang.net>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
|
|
* gnu/packages/astronomy.scm (python-wiimatch)
* gnu/packages/audio.scm (python-resampy, python-librosa)
* gnu/packages/backup.scm (borgmatic)
* gnu/packages/bioinformatics.scm (python-bed-reader, python-pysnptool)
(python-pairtools):
* gnu/packages/check.scm (python-pytest-nunit, python-pytest-perf)
* gnu/packages/dav.scm (vdirsyncer, radicale)
* gnu/packages/django.scm (python-django-redis)
* gnu/packages/engineering.scm (python-scikit-rf)
* gnu/packages/fediverse.scm (python-mastodon-py)
* gnu/packages/fontutils.scm (psautohint)
* gnu/packages/geo.scm (python-pyogrio)
* gnu/packages/graphviz.scm (python-uqbar)
* gnu/packages/jupyter.scm (python-jupyterlab-server python-nbclient,
python-jupyterlite-core, python-ipydatawidgets)
* gnu/packages/machine-learning.scm
(python-pymanopt, python-tensorly, python-torchmetrics)
* gnu/packages/maths.scm (python-libensemble)
* gnu/packages/music.scm (stargate)
* gnu/packages/python-check.scm (python-atpublic, python-vcrpy)
* gnu/packages/python-compression.scm (python-zipstream-ng)
* gnu/packages/python-science.scm (python-plotnine,
python-pandaparallel, python-pyts, python-pingouin)
* gnu/packages/python-web.scm (python-devpi-process, python-cheroot,
python-jsonpickle, python-flask-babel, python-url-normalize,
python-elasticsearch, python-hupper, python-simple-websocket,
python-apiron, python-huggingface-hub, python-aiosignal, python-ovh,
python-cbor2, python-zeep, hypercorn, python-warcio, python-aioftp,
python-oauthlib, python-tinycss2, python-cssselect2, python-httpcore,
python-wsgiprox, python-venusian, gunicorn)
* gnu/packages/python-xyz.scm (python-janus, python-affine,
python-contourpy, python-echo, python-rasterio, python-rich-tables,
python-babel, python-pymarshal, python-portalocker, python-expandvars,
python-mizani, python-cligj, autokey,
python-robotframework-pythonlibcore, python-lsp-jsonrpc,
python-numpydoc, python-pillow, python-manimpango, python-cairocffi,
python-pubmed-parser, python-sentry-sdk, python-prettytable,
python-sniffio, python-ipywidgets, python-pyproject-api,
python-pymemcache, python-async-lru, python-numcodecs, python-mwclient,
python-cmd2, python-pyan3, python-platformdirs, python-multipart,
python-shtab, python-scooby)
* gnu/packages/rdf.scm (python-rdflib-6)
* gnu/packages/simulation.scm (python-fenics-dijitso)
* gnu/packages/sphinx.scm (python-sphinx-design)
* gnu/packages/statistics.scm (python-patsy, python-rchitect)
* gnu/packages/task-management.scm (todoman)
* gnu/packages/vpn.scm (sshuttle)
* gnu/packages/web.scm (anonip, python-tibanna)
[native-inputs]: Remove python-pytest-cov.
Change-Id: I32f027794e90333c27fdff5871180779f603846c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
|
|
* gnu/packages/maths.scm (jacal): Delete variable.
Change-Id: I460845e40df9ffd07b173e1c96c45958acab9517
|
|
* gnu/packages/maths.scm (nanoflann): New variable.
Change-Id: I4e6b5a8423a7577fd8720441b2fab9d79dc0c8a1
Signed-off-by: Gabriel Wicki <gabriel@erlikon.ch>
|
|
* gnu/packages/maths.scm (python-constraint2): New variable.
Change-Id: I436a0e664c0fae31efb18915246c6bfc2137f118
Merges: https://codeberg.org/guix/guix/pulls/8315
Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Nguyễn Gia Phong <cnx@loang.net>
|
|
* gnu/packages/maths.scm (cvc5): Update to 1.3.4.
[source]<patches>: Remove patches.
* gnu/local.mk (dist_patch_DATA): Deregister removed patches.
* gnu/packages/patches/cvc5-reproducible-build.patch: Delete file.
* gnu/packages/patches/cvc5-symfpu-compatibility.patch: Delete file.
Change-Id: I83d05653587fedcb21b78dfbae2026960fe07f55
|
|
* gnu/packages/maths.scm: hypre,hypre-openmpi: use doxygen 1.16.1
Change-Id: I221ac26d0b30028f87c7b2a398d3922e0e6c0cde
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #8351
|
|
* gnu/packages/maths.scm (opencascade-occt): Build with VTK enabled.
[inputs]: Add vtk.
[arguments]: Enable USE_VTK build flag.
[home-page]: Switch to https://dev.opencascade.org.
Change-Id: I3a57793c43084be13b1f078fcacc73a553ad82c5
Signed-off-by: Andreas Enge <andreas@enge.fr>
|
|
* gnu/packages/maths.scm (mcrl2)[version]: Update to 202507.0.
[source]: Update hash accordingly.
[inputs]: Update to use qtbase@6.
Change-Id: Idb114c6af0f83ed9f7d3f8d679f0726c5fa3f547
|
|
* gnu/packages/maths.scm (voro++): New variable.
Change-Id: I86fa0f124eb5b8b25fb099bb24b3c499c993345f
Reviewed-by: Hugo Buddelmeijer <hugo@buddelmeijer.nl>
|
|
* gnu/packages/maths.scm (kissat)[inputs]: Add drat-trim.
Change-Id: I28a06f58813be4bfc622de858b52d8ad6ba6b524
|
|
* gnu/packages/maths.scm (drat-trim): New variable.
Change-Id: Ic0545d6cf4dec45a0167baaee8ca695c70220096
|
|
* gnu/packages/maths.scm (bitwuzla): Update to 0.9.0.
[arguments]<#:phases>{make-git-optional}: Remove phase, fixed upstream.
[inputs]: Add mpfr, switch to cadical-2.1.
Change-Id: I0185e83840ded5758e6afd3e7c9a6d8e8b0c0651
|
|
* packages/patches/cvc5-symfpu-compatibility.patch: New patch.
* gnu/local.mk (dist_patch_DATA) Register it.
* gnu/packages/maths.scm (cvc5)[patches]: Use it.
Change-Id: Ie8b9b24efed45365a1e974396d6e3d9c5367bf1e
|
|
* gnu/packages/maths.scm (symfpu): Update to 0.0-2.aeaa3fa.
Change-Id: I9056c47e19a637aa2ba3038eb9e458429e88385a
|
|
* gnu/packages/maths.scm (netcdf)[arguments]: Conditionally pass CFLAGS to
ignore incompatible pointer types; conditionally update 'fix-tests phase to
skip two broken tests on 32-bit platforms.
Change-Id: Id5d149038275c152bbb30f0b155a2c2f7e05a76e
|
|
* gnu/packages/maths.scm (highs): Update to 1.14.0.
[description]: End with a period.
Change-Id: Ibb20b6bfa553be855c96a4960c36fd2c42f462e0
|
|
* gnu/packages/maths.scm (kissat): Update to 4.0.4.
[arguments]<#:phases>{patch-source}: Don't check if /etc/passwd is writable.
Change-Id: I40d6b22bea16009fa67fa8abcda95ea9824e5baf
|
|
* gnu/packages/maths.scm (sundials)[native-inputs]: Remove python-2; add
python-minimal-wrapper.
Change-Id: I7e0e8984786391fdf9b966acd48560ea3f2e5d7a
|
|
* gnu/packages/maths.scm (cvc5)[#:phases] <build-tests>: Check tests?
before building the test programs, which are only used by 'check.
Change-Id: I14161f88cfde6bdbcb76518b7aa8517640e2cdc1
|
|
* gnu/packages/patches/cvc5-reproducible-build.patch: New patch.
* gnu/local.mk (dist_patch_DATA) Register it.
* gnu/packages/maths.scm (cvc5)[patches]: Use it.
Change-Id: I03e1b12a1fdaa37c327860c7890ab0f1389f8f87
|
|
* gnu/packages/maths.scm (cadical)[#:phases] <no-build-date>:
Don't encode current date in binaries.
Change-Id: If73a92adc4983b49c6e0bd8575c69a28484fd0fc
|
|
* gnu/packages/maths.scm (minizinc)[inputs]: Add or-tools.
[arguments]<#:phases>{install-solver-configs}:
Install OR-Tools' config.
Change-Id: Ibc301b458487c3465251c1c6d97f5858d7d6d59e
Signed-off-by: Nguyễn Gia Phong <cnx@loang.net>
|
|
* gnu/packages/maths.scm (cvc5): New variable.
Change-Id: Ia8bb80d7763f1dcf8497ae31f35661f4935c853f
|
|
* gnu/packages/maths.scm (nauty): Update to 2.9.3.
Change-Id: I86d77c73014b4564f3e05f4111665315bc7e701f
|
|
* gnu/packages/maths.scm (louvain-community)
[arguments]<#:phases>: Add 'cmake-lib-full-path phase.
Change-Id: I5f957c828f39b24a6fa8da8e3d19f16b5c328303
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
|
|
* gnu/packages/maths.scm (cadical): Update to 2.2.1.
[patches]: Remove cadical-add-shared-library.patch.
[arguments]<#:configure-flags>: Add "-shared".
<#:phases>: Remove replacement for 'check.
In 'configure no longer invoke setenv before configuring.
(cadical-2.1)[#:configure-flags]: Use empty list.
[#:phases]: Add 'set-shared-flags. Replace 'check as before.
Change-Id: I67c64cfe6de0b88d0fce5103a6dcc273a2b5f244
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
|
|
With the latest 2.2.X version of cadical, lean4's test suite fails.
This can be mitigated by packaging the old version as cadical-2.1.
* gnu/packages/maths.scm (cadical-2.1): New variable.
* gnu/packages/lean.scm (lean4)[inputs]: Replace cadical with cadical-2.1.
Change-Id: Id5e4a06266e0688454040caf0766bf8d769bbd10
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
|
|
* gnu/packages/maths.scm (cadical): Update to 2.1.3.
* gnu/packages/patches/cadical-add-shared-library.patch: Adjust accordingly.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
|
|
* gnu/packages/maths.scm (libpoly): Update to 0.2.1.
Change-Id: If28db7aced2c68cb066d67512b6164b5488a7a51
|
|
* gnu/packages/maths.scm (hdf5)[outputs]: Add 'doc'.
[arguments]: Add a phase to move the documentation to the 'doc' output.
Fixes guix/guix#7486
Merges guix/guix!7495
Change-Id: I9753715f270748abff9ddf8adaa64120fe167664
|
|
* gnu/packages/maths.scm (nlopt)[inputs]: Remove octave; add octave-cli.
Change-Id: Id655133857acda07f2a4fbd28261abd0ba8b64e6
|
|
* gnu/packages/maths.scm (nlopt)[inputs]: Move python...
[native-inputs]: ...here. Add python-numpy.
Change-Id: I38b976a65aed412863a5a7cd498c7f2ddcc79b55
Signed-off-by: Andreas Enge <andreas@enge.fr>
|
|
* gnu/packages/maths.scm (speedcrunch)[build-system]: Switch to
qt-build-system.
[inputs]: Add qtwayland-5.
Change-Id: I1102457e20ce02f1f5434efe0281acf2fa2ec943
|
|
This commit was made by running this command:
sed -e's/modify-inputs (package-\([a-z-]*\)inputs [a-zA-Z0-9-]\+)/modify-inputs \1inputs/g' -i gnu/packages/*.scm
… and then reverting individual hunks where the change would trigger unbound
variable warnings or other issues (such as ‘native-inputs’ is bound in the
body of the ‘inputs’ field, but it refers to the ‘native-inputs’ thunk defined
just above).
Change-Id: I6d94819f2809313fa1fbefc61897502ee7d66fab
|
|
This commit was made by running this command:
sed -e's/substitute-keyword-arguments (package-arguments [a-zA-Z0-9-]\+)/substitute-keyword-arguments arguments/g' -i gnu/packages/*.scm
… and then:
1. reverting changes from ‘gnu/packages/rust.scm’ and
‘gnu/packages/java.scm’ since they would incur derivation changes and/or
breakage;
2. reverting the change for ‘gcc-final’ in ‘gnu/packages/commencement.scm’;
3. reverting the change for ‘onnx-optimizer’, ‘openquest’, and ‘certbot’,
which use ‘substitute-keyword-arguments’ for arguments that are not
inherited (and thus ‘arguments’ would be unbound);
4. reverting the change for ‘insight-toolkit-legacy’ and ‘wine64-staging’
which make bogus assumptions about inherited arguments.
Change-Id: I122a7cf517b6b63cae38944b5d33ade4b1f5a89c
|
|
* gnu/packages/maths.scm (python-orthopy): Delete variable.
Fixes: guix/guix#6383
Change-Id: I503f9129e4cf68436178cacfcca54d2beba13be4
|
|
* gnu/packages/maths.scm (python-accupy): Delete variable.
* gnu/packages/patches/python-accupy-fix-use-of-perfplot.patch,
gnu/packages/patches/python-accupy-use-matplotx.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Unregister patches.
Change-Id: I3364592d794986674bf5fc55463280f58f8efe8a
|
|
* gnu/packages/maths.scm (python-quadpy): Delete variable.
Change-Id: I294ab599142352bf3fc8aa2c0b5f8b66013de290
|
|
* gnu/packages/maths.scm (openblas)[build-system]: Use gnu-build-system.
[arguments] Fix compiler optimization options.
[phases] Skip configure phase (build from Makefile).
Merges guix/guix!7010
Change-Id: Ifbb46feeb7564e56ab66d598afda9cbcab31b5f6
Signed-off-by: Cayetano Santos <csantosb@inventati.org>
|
|
* gnu/packages/maths.scm (openblas)[source]: Update url.
[build-system]: Switch to cmake-build-system.
[arguments]<#:test-target>: Delete.
<#:build-type>: Set.
<#:configure-flags>: Add.
<#:phases>: Restore ’configure.
Merges guix/guix!6178
Change-Id: Ieabb85ad797d70b8894e1f95937dc22af9b34210
Signed-off-by: Cayetano Santos <csantosb@inventati.org>
Modified-by: Cayetano Santos <csantosb@inventati.org>
|
|
* gnu/packages/maths.scm (openblas): Update to 0.3.31.
Change-Id: If22b461cf8977c4f33704de37225852d3382c662
|
|
* gnu/packages/maths.scm (openblas): Enable OpenMP support.
Change-Id: I72b8badb6d1d627854717ddcbdceab8302114eaf
|
|
* gnu/packages/maths.scm (units): Update to 2.26.
Merges: https://codeberg.org/guix/guix/pulls/6835
Change-Id: I48946549f1938e51bc390c5e36a3546a1453966a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
|
|
* gnu/packages/python-xyz.scm (python-simplesat): Move from here ...
* gnu/packages/maths.scm: ... to here.
Change-Id: I3f2f832e3c9099705800aa88c07913a407c722b4
|
|
* gnu/packages/maths.scm (octave)[inputs]: Add qtwayland-5.
[arguments]<#:modules>: New field.
<#:imported-modules>: New field.
<#:phases>{wrap-qt}: New phase.
Change-Id: I48ff6150f68063a2a9ead3fd84610a19f44996cf
|
|
* gnu/packages/python-xyz.scm (python-dbus): Rename to…
(python-dbus-1.2): … this.
(python-notify2, python-gatt, python2-dbus): Adapt references.
* gnu/packages/audio.scm (cable, jack-2): Likewise.
* gnu/packages/bittorrent.scm (deluge): Likewise.
* gnu/packages/connman.scm (econnman): Likewise.
* gnu/packages/cups.scm (hplip): Likewise.
* gnu/packages/enlightenment.scm (python-efl): Likewise.
* gnu/packages/freedesktop.scm (modem-manager, telepathy-idle): Likewise.
* gnu/packages/gnome.scm (gtg, system-config-printer, libsecret, upower)
(mutter, network-manager, gnome-bluetooth, gnome-shell, terminator)
(gnome-remote-desktop): Likewise.
* gnu/packages/ibus.scm (ibus): Likewise.
* gnu/packages/maths.scm (veusz): Likewise.
* gnu/packages/matrix.scm (pantalaimon): Likewise.
* gnu/packages/messaging.scm (pidgin, gajim): Likewise.
* gnu/packages/mpd.scm (mpdris2): Likewise.
* gnu/packages/music.scm (mididings, a2jmidid, quodlibet): Likewise.
* gnu/packages/password-utils.scm (secretsd): Likewise.
* gnu/packages/stenography.scm (plover): Likewise.
* gnu/packages/sugar.scm (sugar-datastore, sugar-toolkit-gtk3)
(sugar-portfolio-activity): Likewise.
* gnu/packages/video.scm (python-yewtube): Likewise.
* gnu/packages/xdisorg.scm (autokey): Likewise.
* gnu/packages/xfce.scm (catfish): Likewise.
* gnu/packages/xorg.scm (xpra): Likewise.
Change-Id: I19218743260175f1117b8e213131a3b1495c6c48
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
|
|
* gnu/packages/python-xyz.scm (pybind11): Move definition to (pybind11-2).
(python-awkward-cpp, python-contourpy, python-hnswlib, python-dm-tree,
python-matplotlib, python-pikepdf, python-optree, python-fusepy): Change
reference to pybind11-2.
* gnu/packages/astronomy.scm (aoflagger, python-galsim, python-pyclp),
gnu/packages/bioinformatics.scm (python-metacells, python-strawc,
python-coolbox, python-pyspoa, python-scvelo),
gnu/packages/chemistry.scm (avogadrolibs),
gnu/packages/computer-architecture.scm (gem5),
gnu/packages/duckdb.scm (python-duckdb),
gnu/packages/electronics.scm (nextpnr, prjtrellis),
gnu/packages/engineering.scm (python-orocos-kinematics-dynamics),
gnu/packages/geo.scm (ogs-serial),
gnu/packages/graphics.scm (openshadinglanguage, openimageio),
gnu/packages/image-processing.scm (opencolorio),
gnu/packages/machine-learning.scm (python-fasttext, python-ml-dtypes, onnx,
onnx-optimizer, onnxruntime, dlib, tensorflow-lite, tensorpipe,
python-pytorch, python-torchvision, python-ctranslate2, python-hmmlearn,
python-dlib),
gnu/packages/maths.scm (python-accupy, python-ducc0),
gnu/packages/networking.scm (libcamera),
gnu/packages/opencl.scm (python-pyopencl),
gnu/packages/package-management.scm (python-libmambapy),
gnu/packages/physics.scm (python-brille, python-gofit),
gnu/packages/python-check.scm (python-xdoctest),
gnu/packages/python-science.scm (pyre, python-boost-histogram, python-cvxpy,
python-iminuit, python-osqp, python-pyamg, python-qdldl,
python-scikit-build-core, python-scipy, python-vaex-core, python-pyfma),
gnu/packages/radio.scm (gnuradio, gr-osmosdr, gr-dsd, gr-iqbal,
gr-satellites, limesuite-ng),
gnu/packages/simulation.scm (fenics, python-dolfin-adjoint),
gnu/packages/statistics.scm (python-diptest, python-george),
gnu/packages/syndication.scm (syndication-domination): Change reference to pybind11-2.
Change-Id: Ib6abc8580fc2b4c35172f251ff6ba7d80ced4b7b
Signed-off-by: Gabriel Wicki <gabriel@erlikon.ch>
|