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* gnu/packages/astronomy.scm (python-lenstronomy):
[arguments] <test-flags>: Skip one more test.
Change-Id: If2738b947f6d172ba8ac371b0ff1324b53a12f9c
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* gnu/packages/astronomy.scm (python-ads):
[arguments] <test-flags>: Skip one problematic test.
[native-inputs]: Remove python-wheel.
Change-Id: Idada295af88f51e7e3adf0c4730c17378f175369
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After this commit, when both modules are imported:
- if pyproject is imported before, the warning is 'pypi-uri' is
deprecated, use '(@ (guix build-system pyproject) pypi-uri)' instead
- if python is imported before, the warning is `pypi-uri' imported from
both (guix build-system python) and (guix build-system pyproject)
This seems convenient enough to warn for deprecation in the short term,
while avoiding any breaking changes.
* guix/build-system/pyproject.scm (pypi-uri): Move the procedure from
(guix build-system python) here.
* guix/build-system/python (pypi-uri): Drop definition, import it
from (guix build-system pyproject) and deprecate it.
* gnu/packages/openldap.scm: Reorder modules to get the right warning.
* gnu/packages/pypy.scm: Likewise.
* gnu/packages/*.scm : Drop module (guix build-system python).
* tests/import/pypi.scm: Likewise.
Merges: https://codeberg.org/guix/guix/pulls/7448
Change-Id: Ib42f53bc545052eb7918a25afe9db6d5fc2cb834
Reviewed-by: Nguyễn Gia Phong <cnx@loang.net>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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Obtained with
./pre-inst-env guix style -S remove-native-inputs -t python-pytest-cov
on top of https://codeberg.org/guix/guix/pulls/5862
For this reason, I don't think it's relevant to generate a GNU Style
Changelog.
Change-Id: I58fe10452d7eaf2e8bb4dc88dfac5b4a5ee46165
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/astronomy.scm (python-cdflib)[arguments]<#:phases>:
Drop phase 'fix-pytest-config.
Change-Id: Ife876d242ed3fe602203ee675d158bc4f174c735
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/astronomy.scm (python-wiimatch)
* gnu/packages/audio.scm (python-resampy, python-librosa)
* gnu/packages/backup.scm (borgmatic)
* gnu/packages/bioinformatics.scm (python-bed-reader, python-pysnptool)
(python-pairtools):
* gnu/packages/check.scm (python-pytest-nunit, python-pytest-perf)
* gnu/packages/dav.scm (vdirsyncer, radicale)
* gnu/packages/django.scm (python-django-redis)
* gnu/packages/engineering.scm (python-scikit-rf)
* gnu/packages/fediverse.scm (python-mastodon-py)
* gnu/packages/fontutils.scm (psautohint)
* gnu/packages/geo.scm (python-pyogrio)
* gnu/packages/graphviz.scm (python-uqbar)
* gnu/packages/jupyter.scm (python-jupyterlab-server python-nbclient,
python-jupyterlite-core, python-ipydatawidgets)
* gnu/packages/machine-learning.scm
(python-pymanopt, python-tensorly, python-torchmetrics)
* gnu/packages/maths.scm (python-libensemble)
* gnu/packages/music.scm (stargate)
* gnu/packages/python-check.scm (python-atpublic, python-vcrpy)
* gnu/packages/python-compression.scm (python-zipstream-ng)
* gnu/packages/python-science.scm (python-plotnine,
python-pandaparallel, python-pyts, python-pingouin)
* gnu/packages/python-web.scm (python-devpi-process, python-cheroot,
python-jsonpickle, python-flask-babel, python-url-normalize,
python-elasticsearch, python-hupper, python-simple-websocket,
python-apiron, python-huggingface-hub, python-aiosignal, python-ovh,
python-cbor2, python-zeep, hypercorn, python-warcio, python-aioftp,
python-oauthlib, python-tinycss2, python-cssselect2, python-httpcore,
python-wsgiprox, python-venusian, gunicorn)
* gnu/packages/python-xyz.scm (python-janus, python-affine,
python-contourpy, python-echo, python-rasterio, python-rich-tables,
python-babel, python-pymarshal, python-portalocker, python-expandvars,
python-mizani, python-cligj, autokey,
python-robotframework-pythonlibcore, python-lsp-jsonrpc,
python-numpydoc, python-pillow, python-manimpango, python-cairocffi,
python-pubmed-parser, python-sentry-sdk, python-prettytable,
python-sniffio, python-ipywidgets, python-pyproject-api,
python-pymemcache, python-async-lru, python-numcodecs, python-mwclient,
python-cmd2, python-pyan3, python-platformdirs, python-multipart,
python-shtab, python-scooby)
* gnu/packages/rdf.scm (python-rdflib-6)
* gnu/packages/simulation.scm (python-fenics-dijitso)
* gnu/packages/sphinx.scm (python-sphinx-design)
* gnu/packages/statistics.scm (python-patsy, python-rchitect)
* gnu/packages/task-management.scm (todoman)
* gnu/packages/vpn.scm (sshuttle)
* gnu/packages/web.scm (anonip, python-tibanna)
[native-inputs]: Remove python-pytest-cov.
Change-Id: I32f027794e90333c27fdff5871180779f603846c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/astronomy.scm (python-kanon)[arguments]<#:phases>:
Remove 'relax-requirements and 'set-version.
* gnu/packages/machine-learning.scm
(python-botorch)[arguments]<#:phases>: Remove 'pretend-version.
* gnu/packages/openstack.scm
(python-os-testr, python-requestsexceptions)[arguments]<#:phases>:
Remove 'set-version.
* gnu/packages/package-management.scm
(python-conda-libmamba-solver)[arguments]<#:phases>:
Remove 'set-version.
* gnu/packages/patchutils.scm (pwclient)[arguments]<#:phases>:
Remove 'set-PBR_VERSION.
* gnu/packages/python-check.scm
(python-aioresponses)[arguments]<#:phases>: Remove 'set-pbr-version.
* gnu/packages/python-science.scm
(python-modin, python-plotly, python-pytensor)[arguments]<#:phases>:
Remove 'versioneer.
(snakemake-5, snakemake-6, snakemake-7)[arguments]<#:phases>:
Remove 'patch-version.
* gnu/packages/python-web.scm (python-alpaca-py)[arguments]<#:phases>:
Remove 'set-version.
* gnu/packages/python-xyz.scm
(python-logical-unification)[arguments]<#:phases>:
Remove 'versioneer.
(python-debugpy, python-strenum)[arguments]<#:phases>:
Remove 'fix-version.
(python-qstylizer)[arguments]<#:phases>: Remove 'set-pbr-version.
(python-retry)[arguments]<#:phases>: Remove 'set-version.
* gnu/packages/statistics.scm (python-pymc)[arguments]<#:phases>:
Remove 'versioneer.
Change-Id: I7b4557c576730e47575305f4f03bfe2523412c6c
Reviewed-by: Nicolas Graves <ngraves@ngraves.fr>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/astronomy.scm (python-cianna): New variable.
Change-Id: Ide1b3e735b6a88f2dd0e7c10e2daf4a00b6e1279
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* gnu/packages/astronomy.scm (python-ctaplot): New variable.
Change-Id: I955f20973cbd90cd8fd98f2dd27e6401a9e6f45a
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* gnu/packages/astronomy.scm (python-swiftsimsoap): New variable.
Change-Id: Ia6c61d41f9972c6d3412ca3fa3c47f2a812fd801
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* gnu/packages/astronomy.scm (python-virgodc): New variable.
Change-Id: I12226cf15fe54d38d861910fe5202f29c8ed031d
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* gnu/packages/astronomy.scm (python-pyspedas): New variable.
Change-Id: Ie69dfdcc25774438a5ae82ebdb85c51664374397
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* gnu/packages/astronomy.scm (python-cdasws): New variable.
Change-Id: Id0fc8ce37ce4021ab4661614b4fc2b52e4b7e652
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* gnu/packages/astronomy.scm (python-hapiclient): New variable.
Change-Id: Id5022a07d40c95d930cc343fd36863b8a5a7133f
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* gnu/packages/astronomy.scm (python-lephare): New variable.
Change-Id: I1286618f925c2c5e861d1d581d64178afff8e004
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* gnu/packages/astronomy.scm (python-p-winds): New variable.
Change-Id: If7a96c1e31618ee7f1989bd90d6b3463443d9334
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* gnu/packages/astronomy.scm (python-flatstar): New variable.
Change-Id: I04d95f0d09dcb551a38f2f71f04a52b62412f195
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* gnu/packages/astronomy.scm (python-pysatmadrigal): New variable.
Change-Id: I17ba10baa30c10ca01416f04c5e9452f7c35ebe8
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* gnu/packages/astronomy.scm (python-madrigalweb): New variable.
Change-Id: I61bf418c29609854466d5235ef80f7565467b5c7
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* gnu/packages/astronomy.scm (python-pysatspaceweather): New variable.
Change-Id: Ibb4507feb6e353658b280a70cfa542ee58e4b645
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* gnu/packages/astronomy.scm (python-spacepy): New variable.
Change-Id: I9ef1b2bdc40710ea40e7ac6b7369b7095bef5a88
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* gnu/packages/astronomy.scm (tenmon): Update to 20260412.
[inputs]: Add qtsvg.
Change-Id: I3faebc88ce31b76ca02a72facbed5e6b361165aa
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* gnu/packages/astronomy.scm (stellarium): Update to 26.1.
[arguments] <tests?>: Enable.
<configure-flags>: Remove options which default value are ON (1), build
tests.
[inputs]: Add qtsvg.
[synopsis, description]: Adjust them.
Change-Id: Ic1221b9df81e8b3436f530bb6bdc53fd251380a4
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* gnu/packages/astronomy.scm (indi): Update to 2.2.0.
Change-Id: I2a34545cc935bac00494038ee5ef12ceb92b442f
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* gnu/packages/astronomy.scm (gpredict): Update to 2.5.1.
Change-Id: If875b2d10cddfbfff54d9bc5f28d8b9dc3a77dd5
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* gnu/packages/astronomy.scm (cpl): Update to 7.3.4.
Change-Id: Ifd4a05be8bf76c9ad4e8a025cc8003ba27799151
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* gnu/packages/astronomy.scm (cianna): Update to
c9aa934a931ed77663997f0f20172ee7f63b068a commit.
[source] <patches>: Add patch fixing missing CUDA error during runtime.
[build-system]: Switch to cmake-build-system.
[phases]{configure, check, build}: Keep phases.
{fix-paths}: Remove phase.
[native-inputs]: Remove python-wrapper, python-numpy, python-setuptools.
* gnu/packages/patches/cianna-remove-error-for-missing-cuda.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch
Change-Id: I953ed80843ce9939b46435d8e9b8a7f2966774d4
Reviewed-by: Hugo Buddelmeijer <hugo@buddelmeijer.nl>
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* gnu/packages/astronomy.scm (celestia-content): Update to
a76199c8bce62761ad577dc5c3523fb4925e09b7 commit.
Change-Id: Ie6eb5006f299411fa9489d7898671c970840067a
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* gnu/packages/astronomy.scm (astroterm): Update to 1.2.0.
Change-Id: I94ca94ea4e6199957ea15293ee7659cd3ed29883
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* gnu/packages/astronomy.scm (python-sirilic): Update to 2.0.10.
Change-Id: Ifd0056dcead7d12fde5377631a14c06cafad4a06
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* gnu/packages/astronomy.scm (python-romancal): Update to
fb49640377b93d1c66456dc5bb7a6d1fa355eea1 commit.
Change-Id: I2264941fdcae8c535d272798ab4d8bb85d33c20b
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* gnu/packages/astronomy.scm (python-asdf-zarr): Update to
df31d9008b07d2a2c0f47df2d550a0bbd4151bb5 commit.
[source]: Switch to git-fetch.
[propagated-inputs]: Remove python-asdf-3; add python-asdf.
[native-inputs]: Remove python-wheel.
Change-Id: I7019c3ceb8d32705b1150a971b65c86821e7c352
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* gnu/packages/astronomy.scm (python-spisea): Update to 2.4.
Change-Id: I22e60126a15331d052e3cf727f801df8de17c8cc
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* gnu/packages/astronomy.scm (python-regularizepsf): Update to 1.2.0.
Change-Id: I8575b10534b4d9324278a64921a9ab7a74c27ab4
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* gnu/packages/astronomy.scm (python-pyxsim): Update to 4.5.0.
Change-Id: I7ce5672014c261158605bf0556b1d28e17ffb4fb
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* gnu/packages/astronomy.scm (python-pypeit): Update to 2.0.1.
Change-Id: Ib4504024f536f02cd7aaa8f59057ad5dbe4d1b7c
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* gnu/packages/astronomy.scm (python-pyhalo): Update to 1.4.6.
[arguments] <test-flags>: Run all tests.
Change-Id: I16af677d0c4c3f7264f70772127cb82adadffa9c
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* gnu/packages/astronomy.scm (python-pyastronomy): Update to 0.25.0.
Change-Id: Id2b169e298178524da86e8fde08130f69d419c11
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* gnu/packages/astronomy.scm (python-ctapipe): Update to 0.30.0.
[source]: Switch to git-fetch.
[arguments] <tests?, test-flags>: Enable some portion of tests not
requiring remote data.
<phases>: Add 'remove-test-files.
[native-inputs]: Add nss-certs-for-test, python-h5py, python-pytest,
python-pytest-timeout, python-pytest-astropy-header,
python-pytest-xdist, and python-tomli.
Change-Id: If3fbc24c58c87ba4cadd2faddbdba38ba7abab33
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* gnu/packages/astronomy.scm (python-radiospectra):
[source]: Switch to git-fetch.
[arguments] <test-flags>: Limit parallel tests up to 8 threads.
[phases]{sanity-check}: Keep the phase.
{set-home-env}: Rename to {set-HOME}.
[native-inputs]: Remove python-wheel.
Change-Id: I1c7e9c4bdcc766567fc9246340e8aaa39e3cec8e
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* gnu/packages/astronomy.scm (python-aiapy): Update to 0.12.0.
[source]: Switch to git-fetch.
[arguments] <test-flags>: Run all tests.
[phases]{set-home}: Adjust name to {set-HOME}, remove redundant comment.
{include-package-data}: New phase.
Change-Id: Id5368484909bddec77845f92758eda3a317bd19a
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* gnu/packages/astronomy.scm (python-dkist): Update to
4369dd7830b29c6bf29f9053852d150eef37d971 commit.
[source]: Switch to git-fetch.
Change-Id: I9c3156c8027892eba1e95d4919e4fb77152a6a64
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* gnu/packages/astronomy.scm (python-soxs): Update to 5.3.0.
Change-Id: I1945fcbf2f02f478a1fb224b190cc3b92a420729
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* gnu/packages/astronomy.scm (python-romanisim): Update to 0.13.1.
Change-Id: Ib7727d059fb85bce9e56a9b61e92f69d137e208d
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* gnu/packages/astronomy.scm (python-pysm3): Update to 3.4.4.
Change-Id: I18ffffc389c5d83f9adb4d91cf74e384952a5515
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* gnu/packages/astronomy.scm (python-jwst): Update to 2.0.0.
[source]: Switch to git-fetch.
[phases]{relax-requirements}: Adjust phase.
Change-Id: I5004446c1f03614d9e27319cef3063a229bd9421
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* gnu/packages/astronomy.scm (python-swiftgalaxy): Update to 3.0.1.
Change-Id: I4a861e8165c51e5fd37d391f71b1859f735fdb56
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* gnu/packages/astronomy.scm (python-pynbody): Update to 2.4.2.
Change-Id: I2bd0fba9ed181f18a59ce4bcd0a65b035dab8ba8
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* gnu/packages/astronomy.scm (python-stdatamodels): Update to 5.0.1.
[propagated-inputs]: Add python-gwcs.
[native-inputs]: Remove nss-certs-for-test.
Change-Id: I7c27d88cc468527afcf3142adc521d2d0a0b9fbc
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* gnu/packages/astronomy.scm (python-gammapy): Update to 2.1.
[source]: Switch to git-fetch.
[arguments] <test-flags>: Run all tests, provide --duration option to
report on long running tests.
<phases>: Remove 'relax-requirements.
[description]: Fix column fill.
Change-Id: Iebc70c76d80138644ea25c44c3998afbcbea17cb
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