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2026-01-25gnu: python-anndata: Update to 0.12.7.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-anndata): Update to 0.12.7. [arguments] <test-flags>: Skip CUDA dependent tests. [phases]{set-version}: Remove setting zip timestamp logic. [propagated-inputs]: Remove python-importlib-metadata, python-scikit-learn, and python-setuptools; add python-numpy. [native-inputs]: Add hdf5, python-openpyxl, python-pyarrow, python-pytest-randomly, and python-scikit-learn. Change-Id: I8e68cf85d435a13db995ea966ed5ff9edac3d672 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-awkward: Update to 2.8.5.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-awkward): Update to 2.8.5. [arguments] <test-flags>: Skip CUDA tests only. [propagated-inputs]: Remove python-typing-extensions. [home-page]: Refresh it as seen in project's README. Change-Id: I5cebada2be766618633b0d082c88ae3d15490e9f Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-awkward-cpp: Update to 47.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-awkward-cpp): Update to 47. [arguments]: Drop all. [home-page]: Refresh it as seen in project's README. Change-Id: I27be188fc95447a17c10b09f653bb28325367998 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: crossmap: Update to 0.7.3.Sharlatan Hellseher
* gnu/packages/bioinformatics.scm (crossmap): Update to 0.7.3. [source] <snippet>: Adjust it for a new location of egg info directory. Change-Id: Ic826c4c42c2386dc9d1b301667be1dbb5d2db3eb Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pynbody: Use python-ipython-minimal for tests.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-pynbody)[native-inputs]: Remove python-ipython; add python-ipython-minimal. Change-Id: I2a87ff21b94cff7b3b3b2eb5c150b362fadede60 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pycollada: Update to 0.9.2.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-pycollada): Update to 0.9.2. [native-inputs]: Remove python-wheel. Change-Id: I3cc70c7eeda9e4c54a0457ba430e4c6cbe1697f3 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-notebook: Fix build.Sharlatan Hellseher
* gnu/packages/jupyter.scm (python-notebook)[arguments] <test-flags>: Skip one test. [propagated-inputs]: Swap python-jupyter-client@8 with python-jupyter-client@7. Change-Id: I37b420120395924c524f1936723e2a2c6228761d Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: Add python-jupyter-client-7.Sharlatan Hellseher
* gnu/packages/jupyter.scm (python-jupyter-client-7): New variable. Change-Id: I6164464161b0725d97c8eaf6ac1b46b03b1f13e3 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-jupyter-console: Move to jupyter.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-jupyter-console): Move from here ... * gnu/packages/jupyter.scm: ... to here. Change-Id: I687d44df58fab4d62a3eac92f2dab1eebdc89921 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-jupyter-console: Update to 6.6.3.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-jupyter-console): Update to 6.6.3. [arguments] <test-flags>: Skip one test. <phases>: Add 'pre-check. [propagated-inputs]: Add python-ipython, python-jupyter-core, python-pyzmq, and python-traitlets. [native-inputs]: Remove python-setuptools; add python-flaky and python-hatchling. Change-Id: Ia7d12b313cfcc890a5173813b92d97872ece742b Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-ipykernel: Update to 7.1.0.Sharlatan Hellseher
* gnu/packages/jupyter.scm (python-ipykernel): Update to 7.1.0. Remove artifacts. [arguments] <modules>: Drop them as not required. <test-flags>: Skip just one shaky test. <phases>: Remove 'relax-a-bit, and 'hide-deprecation-warnings; add 'fix-pytest-config. Change-Id: I49512675b1d2f4ab1e74ec02aab92ae6673016b2 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-jupyter-client: Update to 8.7.0.Sharlatan Hellseher
* gnu/packages/jupyter.scm (python-jupyter-client): Update to 8.7.0. [inputs]: Add net-tools and openssh. [propagated-inputs]: Remove python-entrypoints and python-nest-asyncio. [native-inputs]: Remove python-pytest-asyncio, python-async-generator, and python-ipython; add python-anyio and python-pytest-jupyter-minimal. Change-Id: I0c058aa67c6fcb71c5fcfaca34c72a15d132b0ee Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: Add python-pytest-jupyter-minimal.Sharlatan Hellseher
* gnu/packages/jupyter.scm (python-pytest-jupyter-minimal): New variable. Change-Id: I0192ea6c58702664651fe838c5f38a82a5fad6d2 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: Remove python-jupyter-console-minimal.Sharlatan Hellseher
Variable is not public and not in use by any other packages. * gnu/packages/python-xyz.scm (python-jupyter-console-minimal): Delete variable. Fixes: guix/guix#4881 Change-Id: I3b13ec6522f8c7c61a39e8f2262b652fbcb4210b Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-jupyter-client: Move to jupyter.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-jupyter-client, python-jupyter-client-bootstrap): Move from here ... * gnu/packages/jupyter.scm: ... to here. Change-Id: I036632e68c808877de14da7f91863be50cdafd61 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-jupyter-client: Simplfy bootstrapping.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-jupyter-client): Take over definition of python-jupyter-client-bootsrap with adjustments. [arguments] <phases>: Remove 'hide-zmq-deprecation-warnings, and 'set-tool-file-name, it uses Python's "subprocess.Popen" now; add 'fix-pytest-config, and 'pre-check'; use default 'check. (python-jupyter-client-bootsrap): Inherit from python-jupyter-client Change-Id: I2cf3aceb4d33995853cd36e79034a5867e51444e Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-jupyter-core: Update to 5.9.1.Sharlatan Hellseher
* gnu/packages/jupyter.scm (python-jupyter-core): Update to 5.9.1. [arguments] <tests-flags>: Rework skipped tests. [phases]{disable-migration}: Rewrite "touch" with Guile. [native-inputs]: Remove python-pytest-timeout. Change-Id: I1b272eafeac129af05fd1c92f4ec72bb73be17f9 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-jupyter-core: Move to jupyter.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-jupyter-core): Move from here ... * gnu/packages/jupyter.scm: ... to here. Change-Id: Id577b47b0a6c9a8754e6dc4f07e5ac8ba4ea106d Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: Add python-ipython-minimal.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-ipython-minimal): New variable. Change-Id: Ib68f3a7f2d45064aa83c7d034011ce4b43391ab6 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-ipython: Update to 9.8.0.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-ipython): Update to 9.8.0. [arguments] <test-backend, test-flags>: Move custom {check} options here. <phases>: Remove 'make-docs-reproducible, resolved upstream; add 'pre-check and use default 'check. [inputs]: Remove readline and which. [propagated-inputs]: Remove python-colorama and python-exceptiongroup; add python-ipython-pygments-lexers. [native-inputs]: Remove python-pickleshare, python-pytest-asyncio-0.21, and python-wheel; add python-pytest-asyncio and python-trio. Change-Id: I3f96109e70772cb07b6a24bb83058473f182e3ed Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-contourpy: Update to 1.3.3.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-contourpy): Update to 1.3.3. Change-Id: Id764c632d375f6e68782adf5385f227eefaebefd Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pythran: Clean up artifacts.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pythran): Adjust style and remove unused parts. [source] <url>: Use a direct URL string. [arguments] <test-flags, phase:pre-check>: Drop them as not used. [native-inputs]: Remove openblas, python-pytest, python-pytest-xdist, and python-wheel. [home-page]: Move above [synopsis]. Change-Id: I7708981548ce68351c00fbf4e8f8e806a18f798a Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pytest-doctestplus: Update to 1.6.0.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-doctestplus): Update to 1.6.0. [phases] {patch-git-path}: Switch to search-input-file. [propagated-inputs]: Remove python-setuptools; add python-packaging. [native-inputs]: Remove python-pytest and python-wheel; add python-pytest-bootstrap and python-setuptools. Change-Id: Ie3fae7a1a639bf2b3a77dde3cdfd4696a929696e Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pytest-randomly: Move to python-check.Sharlatan Hellseher
* gnu/packages/check.scm (python-pytest-randomly): Move from here ... * gnu/packages/python-check.scm: ... to here. Change-Id: I6f121680e3cb08a88c45b82a9832286631f7ba2d Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pytest-randomly: Update to 4.0.1.Sharlatan Hellseher
* gnu/packages/check.scm (python-pytest-randomly): Update to 4.0.1. [arguments] <test-flags>: Rework skipped tests to reduce closure size. [native-inputs]: Remove python-factory-boy, python-faker, python-numpy, and python-pytest-xdist. Change-Id: I1293bc007a1e4813f136758dd242b541fcb59c81 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-stcal: Adjust relax-requirments phase.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stcal): [arguments] <phases>: Remove 'patch-slope-fitter; {relax-requirments} remove relaxation for SciPy. [native-inputs]: Remove python-wheel. Change-Id: Ic886fe9f8d7a809f4f775f0db314b074124696ff Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-jmespath: Switch to pyproject.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-jmespath): [build-system]: Switch to pyproject-build-system. [native-inputs]: Remove python-setuptools-67; add python-setuptools. Change-Id: I7c140b87eb9da476cfffc090663e5960b2c57de8 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-specutils: Remove relax-requirements phase.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-specutils)[arguments] <test-flags>: Skip just one test. <phases>: Remove 'relax-requirements. Change-Id: Iad7352e3b69a2d71d125cf56f2d93d843778fb40 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-asap3: Update to 3.13.10.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-asap3): Update to 3.13.10. [arguments] <tests?>: Enable. [native-inputs]: Add python-pytest. Change-Id: I166dfaf5f07f23d2d835d70f460cfa5f3f31ddb9 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-ase: Update to 3.26.0.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-ase): Update to 3.26.0. [arguments] <test-flags>: Run tests in parallel up to 8 threads. [native-inputs]: Remove python-wheel. Change-Id: Ib2e5c9751f6c3358bb35084076f79586473da88f Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: urh: Use python-numpy@1.Sharlatan Hellseher
* gnu/packages/radio.scm (urh)[inputs]: Remove python-numpy; add python-numpy-1. Change-Id: I8951f2250aaaee78c924564843a38b9c983a6dee Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-loompy: Update to 3.0.8.Sharlatan Hellseher
* gnu/packages/bioinformatics.scm (python-loompy): Update to 3.0.8. [native-inputs]: Remove python-wheel. Change-Id: I7ca3d2a5d4e7005bd885197d9739df1c7b3e18f9 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-hnswlib: Update to 0.8.0.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-hnswlib): Update to 0.8.0. Change-Id: I494260ebd9230c729ca4dca0cc7ef5c2685bf19a Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-romancal: Remove relax-requirements phase.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-romancal)[arguments] <phases>: Remove 'relax-requirements. Change-Id: Ie86f5d9747ae0993ace9e619d39f91eea79fe399 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-regions: Update to 0.11.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-regions): Update to 0.11. [propagated-inputs]: Remove python-h5py and python-scipy. [native-inputs]: Remove python-pytest-runner and python-wheel. Change-Id: Ic502d297aecc3b0e3af3df92d05ca555fb6e8f97 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-kalepy: Skip 5 tests.Sharlatan Hellseher
* gnu/packages/statistics.scm (python-kalepy)[arguments] <test-flags>: Skip NumPy incompatible tests. [native-inputs]: Remove python-wheel. Change-Id: Ic9f95969f4a0dc22fae5a48e28f971d573249062 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-sunkit-spex: Update to 0.4.0-0.bb544c4.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-sunkit-spex): Update to bb544c44573d6de44e3d5ba08d06cab0059a4db7 commit. [arguments] <phases>: Remove 'pre-check; keep 'sanity-check. [propagated-inputs]: Remove python-ndim, python-orthopy, and python-quadpy; add python-gwcs, python-ndcube, and python-numpy. [native-inputs]: Remove python-wheel. Change-Id: Ib59e964b5bfa9804df3ed1b38181ad36dfa8ec25 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-numdifftools: Update to 0.9.42.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-numdifftools): Update to 0.9.42. [arguments] <test-flags>: Keep only exclusion markers. <phases>: Remove 'relax-requirements; add 'fix-pytest-config. [propagated-inputs]: Add python-matplotlib. [native-inputs]: Remove python-setuptools, python-setuptools-scm, and python-wheel; add python-pdm-backend. Change-Id: I87bdd34812df8771f53dd2ab8cfc4634ffb0b07d Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-meshio: Skip some tests.Sharlatan Hellseher
* gnu/packages/simulation.scm (python-meshio)[arguments]<test-flags>: Skip some NumPy incompatible failing tests. Change-Id: I48e782b7eb2920c12777bda20a1f3d2753fcf657 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-lofar-h5plot: Use python-numpy@1.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-lofar-h5plot): [propagated-inputs]: Remove python-numpy; add python-numpy-1. [native-inputs]: Remove python-wheel. Change-Id: I1fef6da8cfbc24b85619b5d624d25feb371e7f91 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-losoto: Update to 2.6.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-losoto): Update to 2.6.0. [arguments] <tests?>: Disable for now. <phases>: Add 'set-version, and 'relax-requirements. [propagated-inputs]: Remove python-configparser; add python-lofar-parameterset and python-progressbar2. [native-inputs]: Remove python-cython and python-wheel; add python-pytest and python-setuptools-scm. Change-Id: I314f87b68e3b475c90a59adb94ce904408f90be3 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: Add python-lofar-parameterset.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-lofar-parameterset): New variable. Change-Id: I37c14d916f99a6dc3063e0ad2b9ab15e3759a283 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-glue-astronomy: Skip 3 tests.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-glue-astronomy): Skip 3 tests. Change-Id: I6d5099af4f6c396701ccdcef1439167f5ef9e23f Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-seaborn: Skip 3 tests.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-seaborn)[arguments] <test-flags>: Skip 3 tests. Change-Id: I32ea08c88eadddf1afcbcab51f813ea5a79f8481 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: veusz: Update to 4.2.Sharlatan Hellseher
* gnu/packages/maths.scm (veusz): Update to 4.2. [inputs]: Add python-numpy. [propagated-inputs]: Remove python-numpy. [native-inputs]: Remove python-astropy and python-wheel. Change-Id: Id1258513cc7c7f0ebad71e523f23e37a59cc42ce Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: websockify: Update to 0.13.0.Sharlatan Hellseher
* gnu/packages/web.scm (websockify): Update to 0.13.0. [inputs]: Remove python-simplejson. [native-inputs]: Remove python-wheel. Change-Id: Iad153e094a7863e58f75ef58ecb1f9e61a56a112 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-jwcrypto: Adjust inputs.Sharlatan Hellseher
* gnu/packages/python-web.scm (python-jwcrypto)[propagated-inputs]: Remove python-deprecated; add python-typing-extensions. Change-Id: I0eda45ecdb99e98d7841482fb77c390014a53e2b Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-modin: Update to 0.37.1.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-modin): Update to 0.37.1. [arguments] <test-flags>: Rework options. <phases>: Remove 'loosen-requirements; add 'versioneer, and 'fix-pytest-config; rework {check} phase to include some API tests scenarios. [propagated-inputs]: Remove python-cloudpickle and python-s3fs; add python-fsspec, python-psutil, and python-typing-extensions. [native-inputs]: Remove python-jinja2, python-lxml, python-matplotlib, python-msgpack, python-openpyxl, python-psutil, python-pyarrow, python-pytest-benchmark, python-pytest-cov, python-scipy, python-sqlalchemy, python-tables, python-tqdm, python-xarray, python-xlrd, and python-wheel; add python-s3fs, python-setuptools, and python-versioneer. Change-Id: I86feaa9f1cd110ed2c430e9816d34da165bccb74 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pyopengl: Skip one test.Sharlatan Hellseher
* gnu/packages/python-graphics.scm (python-pyopengl)[arguments] <test-flags>: Skip one more test. Change-Id: I9ed0fb8093f3429fd7bb2f0ad5e2f26220300736 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-cleanlab: Fix build.Sharlatan Hellseher
* gnu/packages/machine-learning.scm (python-cleanlab)[arguments] <test-flags>: Skip one more test. <phases>: Add 'relax-requirements. [native-inputs]: Remove python-wheel; add python-matplotlib. Change-Id: I10e9d8a2eadc2de6d26f6247dc5e2305a215bd91 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
generated by cgit v1.3 (git 2.53.0) at 2026-08-11 11:14:32 +0000