diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 28 |
1 files changed, 20 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9507fde2e3..3a30aacb28 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -20275,17 +20275,29 @@ such as Hi-C contact matrices.") (define-public python-cooltools (package (name "python-cooltools") - (version "0.7.0") - (source (origin - (method url-fetch) - (uri (pypi-uri "cooltools" version)) - (sha256 - (base32 - "076fgqzf6453cx5zs32vz0f5yvfg53w8ayq9s79jssy7gj2x89lb")))) + (version "0.7.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/open2c/cooltools") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "04i8s414scrffi7xfwynyz7k9crgj93d1zmqgipvdh2kvpigifn3")))) (build-system pyproject-build-system) + (arguments + (list + ;; tests: 65 passed, 134 warnings + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'fix-pytest-config + (lambda _ + (delete-file "pytest.ini")))))) (native-inputs (list python-cython - python-pytest)) + python-pytest + python-setuptools)) (propagated-inputs (list python-bioframe python-click |