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| author | Sharlatan Hellseher <sharlatanus@gmail.com> | 2026-01-02 15:25:36 +0000 |
|---|---|---|
| committer | Rutherther <rutherther@ditigal.xyz> | 2026-01-25 21:20:52 +0100 |
| commit | f7c56e273ee4affa2aa5ea0510d92e4079fb6e8f (patch) | |
| tree | 2254120d4b461e98e18b95c4ed757e320f559e8b /gnu | |
| parent | a7c487a04a1e2608e38d39ccf449960f26a64ddb (diff) | |
gnu: python-magic-impute: Update to 3.0.0.
* gnu/packages/bioinformatics.scm (python-magic-impute): Update to 3.0.0.
[arguments] <tests?, test-flags>: Enable them.
[native-inputs]: Add python-pytest and python-setuptools.
[propagated-inputs]: Add python-scprep.
Change-Id: I4e1567fc6b5b32ee77f13d801042ea321f33dfa8
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 21 |
1 files changed, 13 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b0a50bc69e..9507fde2e3 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3196,25 +3196,29 @@ fraction of valid symbols in that position.") (define-public python-magic-impute (package (name "python-magic-impute") - (version "1.2.1") + (version "3.0.0") (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/KrishnaswamyLab/MAGIC") - (commit (string-append "v" version)))) + (url "https://github.com/KrishnaswamyLab/MAGIC") + (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 - "1yjs16vg87lcg9g16bnblg1v9sk73j6dm229lkcz0bfjlzxjhv8w")))) + "1f4ckvpki2461xd5hclhj7gqwj8xizs4d0fd942kvgafidrsdvlx")))) (build-system pyproject-build-system) (arguments (list - #:tests? #false ;there are none + #:test-flags + #~(list "test/test.py") #:phases - '(modify-phases %standard-phases - (add-after 'unpack 'chdir - (lambda _ (chdir "python")))))) + #~(modify-phases %standard-phases + (add-after 'unpack 'chdir + (lambda _ (chdir "python")))))) + (native-inputs + (list python-pytest + python-setuptools)) (propagated-inputs (list python-future python-graphtools @@ -3223,6 +3227,7 @@ fraction of valid symbols in that position.") python-pandas python-scikit-learn python-scipy + python-scprep python-tasklogger)) (home-page "https://github.com/KrishnaswamyLab/MAGIC") (synopsis "Markov affinity-based graph imputation of cells") |