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| author | Sharlatan Hellseher <sharlatanus@gmail.com> | 2026-01-02 20:43:02 +0000 |
|---|---|---|
| committer | Rutherther <rutherther@ditigal.xyz> | 2026-01-25 21:20:53 +0100 |
| commit | db7594b1fcd604f4cc428544eb31b5863370f8b3 (patch) | |
| tree | 6d2e090a6be8f74f28f7f559549d4c8c5ba2ce1c /gnu | |
| parent | f7c56e273ee4affa2aa5ea0510d92e4079fb6e8f (diff) | |
gnu: python-cooltools: Update to 0.7.1.
* gnu/packages/bioinformatics.scm (python-cooltools): Update to 0.7.1.
[arguments] <phases>: Add 'fix-pytest-config.
[native-inputs]: Add python-setuptools.
Change-Id: I1a5c03cc626c1401f1a6b34f7af13d2a259e74a3
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 28 |
1 files changed, 20 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9507fde2e3..3a30aacb28 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -20275,17 +20275,29 @@ such as Hi-C contact matrices.") (define-public python-cooltools (package (name "python-cooltools") - (version "0.7.0") - (source (origin - (method url-fetch) - (uri (pypi-uri "cooltools" version)) - (sha256 - (base32 - "076fgqzf6453cx5zs32vz0f5yvfg53w8ayq9s79jssy7gj2x89lb")))) + (version "0.7.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/open2c/cooltools") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "04i8s414scrffi7xfwynyz7k9crgj93d1zmqgipvdh2kvpigifn3")))) (build-system pyproject-build-system) + (arguments + (list + ;; tests: 65 passed, 134 warnings + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'fix-pytest-config + (lambda _ + (delete-file "pytest.ini")))))) (native-inputs (list python-cython - python-pytest)) + python-pytest + python-setuptools)) (propagated-inputs (list python-bioframe python-click |