diff options
| author | Hugo Buddelmeijer <hugo@buddelmeijer.nl> | 2025-12-17 21:29:47 +0100 |
|---|---|---|
| committer | Sharlatan Hellseher <sharlatanus@gmail.com> | 2025-12-17 23:30:57 +0000 |
| commit | 14ab247eceb63ae48c97a778fbaf4842b06c595f (patch) | |
| tree | a363af2e132843faee7a83146654f7229603815d /gnu | |
| parent | 2ede88e3bc7c4fbbe116bd35d8a02f536d05dac5 (diff) | |
gnu: python-mappy: Switch to pyproject.
* gnu/packages/bioinformatics.scm (python-mappy):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#test-backend, #test-flags>: Replace check phase with
example (no tests).
[native-inputs]: Add python-setuptools.
Change-Id: I9561de7e0ee94dbd1134c23c608d262169407456
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 27 |
1 files changed, 19 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0fca39a8e6..5b31e175ee 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -18689,15 +18689,26 @@ cases include: (package (name "python-mappy") (version "2.24") - (source (origin - (method url-fetch) - (uri (pypi-uri "mappy" version)) - (sha256 - (base32 - "1ycszza87p9qvx8mis9v1hry0ac465x1xcxbsn1k45qlxxrzp8im")))) - (build-system python-build-system) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/lh3/minimap2") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0k658659ivxk2xnyawrfqdhcji6a3xcqdr5a9r5myzb2ivypnjmh")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-backend #~'custom + #:test-flags + #~(list "-c" (string-append "import mappy;" + " print(mappy.revcomp(" + "mappy.Aligner('test/MT-human.fa')" + ".seq('MT_human', 100, 200)))")))) (native-inputs - (list python-cython)) + (list python-cython python-setuptools)) (inputs (list zlib)) (home-page "https://github.com/lh3/minimap2") |