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| author | Simon Tournier <zimon.toutoune@gmail.com> | 2026-01-08 16:36:16 +0100 |
|---|---|---|
| committer | Andreas Enge <andreas@enge.fr> | 2026-01-08 19:54:30 +0100 |
| commit | 108182dbb589e83de4ab46dd17b89860cef021cb (patch) | |
| tree | 33c6a8e793231909847cfd27ce3cf2a5a527a8c5 /gnu | |
| parent | 132d4690b9d20a6df6594e5ff1edec564ef554d7 (diff) | |
gnu: velvet: Adjust for GCC@14 and documentation building.
* gnu/packages/bioinformatics.scm (velvet)
[arguments]:<make-flags>: Add incompatible-pointer-types.
<phases>: Allow TeXlive to create font.
[native-inputs]: Add texlive-ec.
Fixes: guix/guix#5471
Change-Id: I0d44b763a77a64c900f09efdea30d8a89d3b2496
Signed-off-by: Andreas Enge <andreas@enge.fr>
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 11 |
1 files changed, 9 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d063c276e0..194e5b9fd6 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -21143,7 +21143,8 @@ to an artifact/contaminant file.") (build-system gnu-build-system) (arguments (list - #:make-flags #~(list "OPENMP=t") + #:make-flags #~(list "OPENMP=t" + "CFLAGS=-Wall -Wno-error=incompatible-pointer-types") #:test-target "test" #:phases #~(modify-phases %standard-phases @@ -21152,6 +21153,11 @@ to an artifact/contaminant file.") (lambda _ (substitute* "src/binarySequences.c" (("../third-party/zlib-1.2.3/zlib.h") "zlib.h")))) + (add-before 'build 'set-home-env + (lambda _ + ;; TeXLive requires HOME to be set. + ;; Permission denied: '/homeless-shelter' + (setenv "HOME" "/tmp"))) (replace 'install (lambda _ (let ((bin (string-append #$output "/bin")) @@ -21166,7 +21172,8 @@ to an artifact/contaminant file.") (list openmpi zlib)) (native-inputs (list (texlive-local-tree - (list texlive-infwarerr + (list texlive-ec + texlive-infwarerr texlive-kvoptions texlive-pdftexcmds)))) (home-page "https://www.ebi.ac.uk/~zerbino/velvet/") |